; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008832 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008832
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosomal protein S12
Genome locationChr06:114346..116442
RNA-Seq ExpressionHG10008832
SyntenyHG10008832
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39086.1 ribosomal protein S12 [Striga asiatica]2.1e-1684.62Show/hide
Query:  REEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        REEACLKCT+      CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  REEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

KAF7141076.1 hypothetical protein RHSIM_Rhsim06G0084200 [Rhododendron simsii]5.2e-0745.78Show/hide
Query:  KSCG---VVLQSYLLAISY----QARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA
        +SCG   V L   L    Y     A DA A +  C KC  +PS+ EC FI+V  DWR+PYI++LT+GTLP DR +    KK A
Subjt:  KSCG---VVLQSYLLAISY----QARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA

KAG5543934.1 hypothetical protein RHGRI_016627 [Rhododendron griersonianum]2.0e-0652.54Show/hide
Query:  ARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA
        A DA   +  C KC  +PS+AEC FI V  DWR+PYI++LT GTLP DR +   +KK A
Subjt:  ARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA

KAG5562371.1 hypothetical protein RHGRI_005194 [Rhododendron griersonianum]2.0e-0652.54Show/hide
Query:  ARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA
        A DA   +  C KC  +PS+AEC FI V  DWR+PYI++LT GTLP DR +   +KK A
Subjt:  ARDAKAREEACLKCTWMPSRAECAFIDVV-DWRQPYIEYLTKGTLPDDRYEANKLKKIA

KJB09732.1 hypothetical protein B456_001G160800 [Gossypium raimondii]7.5e-1492.68Show/hide
Query:  ARDAKAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK
        ARDAKAREEACLKCTWMP RAECAFI+VVDWRQPYIEYLT+
Subjt:  ARDAKAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK

TrEMBL top hitse value%identityAlignment
A0A0D2LZA6 Uncharacterized protein3.6e-1492.68Show/hide
Query:  ARDAKAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK
        ARDAKAREEACLKCTWMP RAECAFI+VVDWRQPYIEYLT+
Subjt:  ARDAKAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK

A0A5A7Q2J0 Ribosomal protein S121.0e-1684.62Show/hide
Query:  REEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        REEACLKCT+      CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  REEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCGACTGAACCTCGGCACCGCTTTGTATATTAAGTCTTGCGGTGTAGTCCTTCAGAGTTATCTACTAGCCATATCATATCAGGCTAGGGATGCAAAAGCTCGAGA
AGAGGCTTGTCTAAAATGCACATGGATGCCCTCTCGAGCAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTAC
CGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTCAAGGTCAAATCTTTAGTAGCTCTTGCTCGAGTTCCAGTTCTTTCCCTAGTTGCTGTAGAAGTA
GCAGAAACTCCATCAACAGTTGCTTTAGTTGAGGAAGTAGCTTCAAGTACAGTAAATTCTCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCGACTGAACCTCGGCACCGCTTTGTATATTAAGTCTTGCGGTGTAGTCCTTCAGAGTTATCTACTAGCCATATCATATCAGGCTAGGGATGCAAAAGCTCGAGA
AGAGGCTTGTCTAAAATGCACATGGATGCCCTCTCGAGCAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTAC
CGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTCAAGGTCAAATCTTTAGTAGCTCTTGCTCGAGTTCCAGTTCTTTCCCTAGTTGCTGTAGAAGTA
GCAGAAACTCCATCAACAGTTGCTTTAGTTGAGGAAGTAGCTTCAAGTACAGTAAATTCTCTATAA
Protein sequenceShow/hide protein sequence
MVRLNLGTALYIKSCGVVLQSYLLAISYQARDAKAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIANLKVKSLVALARVPVLSLVAVEV
AETPSTVALVEEVASSTVNSL