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HG10008838 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008838
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationChr06:143018..143660
RNA-Seq ExpressionHG10008838
SyntenyHG10008838
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1835825.1 unnamed protein product [Ananas comosus var. bracteatus]4.5e-2237.11Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRYV
        +GG G+R +A+L H+RS + +RVLA+YT+          RG                            D+  E  +E ++DFLEWS+LR+W++ WLRY 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRYV

Query:  HWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPP
         WY + A  PD+++ + F A + E++WR+ +   +LI FGLLWK+YDLVA KG+ +  P
Subjt:  HWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPP

KAB1199680.1 hypothetical protein CJ030_MR0G017069 [Morella rubra]9.3e-3690.12Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEK WRIRRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP

KAB8477474.1 hypothetical protein FH972_025340 [Carpinus fangiana]6.0e-3543.23Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLR
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLR

Query:  YVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
        Y H Y+  A  PD+ ++  F  +V  + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  YVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

KAF3452148.1 hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis]5.6e-7384.91Show/hide
Query:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIR
        RVLAKLSHTRSRHFERVLAMYTKPRGHND  LELWL RV             FLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEKEWRIR
Subjt:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIR

Query:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT
        RESSELIRF LLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLL GVSG+DFLVEPDG T
Subjt:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT

KAF9601036.1 hypothetical protein IFM89_015021 [Coptis chinensis]1.7e-2135.23Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL
        IGGGGY+ L KL   RSR  +R+ +M  K   GH    L LWL                                     E+V+   E++ LR WMK+WL
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL

Query:  RYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL
         Y+ WY  VA  PD SL+  F A +    W+  R+   LI+FGLLW+++DLV + G+ + PP L+      +   WLL G+ G  +LV  DGL
Subjt:  RYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL

TrEMBL top hitse value%identityAlignment
A0A2Z6JSN1 RNA-dependent RNA polymerase5.9e-2043.12Show/hide
Query:  RDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI
        ++F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  RDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A482F2N2 RNA-dependent RNA polymerase5.9e-2043.12Show/hide
Query:  RDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI
        ++F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  RDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A5N6L0Z4 Uncharacterized protein2.9e-3543.23Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLR
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLR

Query:  YVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
        Y H Y+  A  PD+ ++  F  +V  + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  YVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

A0A6A1UKL6 Uncharacterized protein4.5e-3690.12Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEK WRIRRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP

A0A6V7PYJ7 Uncharacterized protein2.2e-2237.11Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRYV
        +GG G+R +A+L H+RS + +RVLA+YT+          RG                            D+  E  +E ++DFLEWS+LR+W++ WLRY 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRYV

Query:  HWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPP
         WY + A  PD+++ + F A + E++WR+ +   +LI FGLLWK+YDLVA KG+ +  P
Subjt:  HWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGTACTGGAATGTCGCGA
ATTCACCGGATCTTTCCTTAAATGACGGATTTTCAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAG
ATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTT
CTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGTACTGGAATGTCGCGA
ATTCACCGGATCTTTCCTTAAATGACGGATTTTCAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAG
ATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTT
CTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTGA
Protein sequenceShow/hide protein sequence
MIGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWK
IYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLTGFERDHHKTLGAPGGRTTLF