; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008859 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008859
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPoly(U)-specific endoribonuclease
Genome locationChr06:303906..304568
RNA-Seq ExpressionHG10008859
SyntenyHG10008859
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579291.1 hypothetical protein SDJN03_23739, partial [Cucurbita argyrosperma subsp. sororia]1.4e-10088.35Show/hide
Query:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP
        F+SPQSLS+WLKPRLPSDSFASWGVKPGTKNVHNLWLE+SEGETSLADSNPPIRT+ VLSLRIID H R+L+ESHQQLSDGTLRNRNRPLSEKMKPNETP
Subjt:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP

Query:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR
        ESAVYRAVKEELGSILGDSDCSEIV+IVPDSY+MKIEERNS SYPGLPACYVLHSMDV VEGLP+ +FCTVEEEEY NSE TS A EAVS+KKHFWKWV 
Subjt:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR

Query:  PDSVDF
         DS+DF
Subjt:  PDSVDF

XP_038874472.1 uncharacterized protein LOC120067121 isoform X1 [Benincasa hispida]2.3e-10890.65Show/hide
Query:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN
        MPLSQFPNSKS    F+SPQSLSEWLKPRLPSDSFASWGV PGTKNVHNLWLEIS+GETSLADSNPPIRTLHVLSLRI+D HHR+L+ESHQQLSDGTLRN
Subjt:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN

Query:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA
        RNRPLSEKMKPNETPESAVYRAVKEELGSI+GDSDCS+IVRIVPDSY+MKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSE TS A
Subjt:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA

Query:  AEAVSIKKHFWKWV
         +AVS+KKHFWKW+
Subjt:  AEAVSIKKHFWKWV

XP_038874473.1 uncharacterized protein LOC120067121 isoform X2 [Benincasa hispida]1.0e-10890.7Show/hide
Query:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN
        MPLSQFPNSKS    F+SPQSLSEWLKPRLPSDSFASWGV PGTKNVHNLWLEIS+GETSLADSNPPIRTLHVLSLRI+D HHR+L+ESHQQLSDGTLRN
Subjt:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN

Query:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA
        RNRPLSEKMKPNETPESAVYRAVKEELGSI+GDSDCS+IVRIVPDSY+MKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSE TS A
Subjt:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA

Query:  AEAVSIKKHFWKWVR
         +AVS+KKHFWKWV+
Subjt:  AEAVSIKKHFWKWVR

XP_038874474.1 uncharacterized protein LOC120067121 isoform X3 [Benincasa hispida]5.1e-10891.08Show/hide
Query:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN
        MPLSQFPNSKS    F+SPQSLSEWLKPRLPSDSFASWGV PGTKNVHNLWLEIS+GETSLADSNPPIRTLHVLSLRI+D HHR+L+ESHQQLSDGTLRN
Subjt:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN

Query:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA
        RNRPLSEKMKPNETPESAVYRAVKEELGSI+GDSDCS+IVRIVPDSY+MKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSE TS A
Subjt:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA

Query:  AEAVSIKKHFWKW
         +AVS+KKHFWKW
Subjt:  AEAVSIKKHFWKW

XP_038874475.1 uncharacterized protein LOC120067121 isoform X4 [Benincasa hispida]5.1e-10891.08Show/hide
Query:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN
        MPLSQFPNSKS    F+SPQSLSEWLKPRLPSDSFASWGV PGTKNVHNLWLEIS+GETSLADSNPPIRTLHVLSLRI+D HHR+L+ESHQQLSDGTLRN
Subjt:  MPLSQFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRN

Query:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA
        RNRPLSEKMKPNETPESAVYRAVKEELGSI+GDSDCS+IVRIVPDSY+MKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSE TS A
Subjt:  RNRPLSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNA

Query:  AEAVSIKKHFWKW
         +AVS+KKHFWKW
Subjt:  AEAVSIKKHFWKW

TrEMBL top hitse value%identityAlignment
A0A0A0KJQ6 Uncharacterized protein1.9e-10084.33Show/hide
Query:  QFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRP
        +FPNS S    F+SPQSLSEWL+PRLPS SFASWGV PGTKN+HNLWLEIS+GETSLADSNPPIRTLHVLSLRIID HHRLL+ESHQQLSDGTLRNRNRP
Subjt:  QFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRP

Query:  LSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAV
        LSEKMKPNETPESAVYRAV+EELGSILGDSD S++VRIVPDSY++KIEER+SVSYPGL A YVLHSMDVWVEGLP+G+FCTVEEEEY NSE T+ A  AV
Subjt:  LSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAV

Query:  SIKKHFWKWVRPDSVDF
        S+KKHFWKWV P+SVDF
Subjt:  SIKKHFWKWVRPDSVDF

A0A1S3AUP2 uncharacterized protein LOC1034830011.6e-9983.33Show/hide
Query:  QFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRP
        +FPNS S    F+SPQSLSEWL+PRLPS SFASWGV PGTKN+HNLWLEIS+GETSLADSNPPIR LHVLSLRIID HHRLL+ESHQQLSDGTLRNRNRP
Subjt:  QFPNSKS----FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRP

Query:  LSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAV
        LSEKMKPNETPESAVYRAV+EELGSIL DSDCS +VRIVPDSY++KIEER+SVSYPGLPACYVLHSMD+ VEGLP+G+FCTVE+EEY NSE T+ A +AV
Subjt:  LSEKMKPNETPESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAV

Query:  SIKKHFWKWVRPDSVD
        S+KKHFWKWV P+SVD
Subjt:  SIKKHFWKWVRPDSVD

A0A6J1CCN3 uncharacterized protein LOC1110095088.9e-9885.92Show/hide
Query:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP
        F+SPQSLS+WL PRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRT+ V+SLRI+DKH+R+L+ESHQ+LSDGTLRNRNRPLSEKMKPNETP
Subjt:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP

Query:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAE-AVSIKKHFWKWV
        ESAVYRAVKEELGSI+GD DC EIVRIVP+SY+MKIEERNSVSYPGLPACYVLHSMDVWVEGLP+ EFCTVEEEEY  SE T  A + AVS+KKHFWKWV
Subjt:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAE-AVSIKKHFWKWV

Query:  RPDSVD
          DSVD
Subjt:  RPDSVD

A0A6J1E2U8 uncharacterized protein LOC1114303196.6e-10188.35Show/hide
Query:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP
        F+SPQSLS+WLKPRLPSDSFASWGVKPGTKNVHNLWLE+SEGETSLADSNPPIRT+ VLSLRIID H R+L+ESHQQLSDGTLRNRNRPLSEKMKPNETP
Subjt:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP

Query:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR
        ESAVYRAVKEELGSILGDSDCSEIV+IVPDSY+MKIEERNS SYPGLPACYVLHSMDV VEGLP+ +FCTVEEEEY NSE TS A EAVS+KKHFWKWV 
Subjt:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR

Query:  PDSVDF
         DS+DF
Subjt:  PDSVDF

A0A6J1IA21 uncharacterized protein LOC1114729794.3e-10087.38Show/hide
Query:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP
        F+SPQSLS+WLKPRLPSDSFASWGVKPGTKNVHNLWLE+SEGETSLADS PPIRT+ VLSLRIID H R+L+ESHQQLSDGTLRNRNRPLSEKMKPNETP
Subjt:  FSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNETP

Query:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR
        ESAVYRAVKEELGSILGDSDCSEIV+IVPDSY+MKIEERNS SYPGLPACYVLHSMDV VEGLP+ +FCTVEEEEY NSE +S A EAVS+KKHFWKWV 
Subjt:  ESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVR

Query:  PDSVDF
         DS+DF
Subjt:  PDSVDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24460.1 unknown protein6.1e-7560.37Show/hide
Query:  PNSKSFSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMK
        P ++ F++PQSLS+WL+ RLPSDSFA+WGVKPGTKNVHNLWLE+S+GETSLADS PP+RT++V+++R+I K+ R+L+E+HQ+LSDG++R R RPLSEKMK
Subjt:  PNSKSFSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMK

Query:  PNETPESAVYRAVKEELGSIL-GDSD-CSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAE------
        P E+P+ AV+RA+KEELGSI  GD D   + ++I+P +Y  ++EERNS+SYPGLPA Y LHS++  VEGLPE +FCT EE+EY   + T ++ E      
Subjt:  PNETPESAVYRAVKEELGSIL-GDSD-CSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAE------

Query:  AVSIKKHFWKWVRPDSV
        AV++K+H+WKWV PDS+
Subjt:  AVSIKKHFWKWVRPDSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTCTCACAATTTCCCAACTCCAAATCCTTCTCCTCTCCTCAATCCCTCTCCGAATGGCTTAAACCTCGCCTCCCCTCCGATTCTTTTGCTTCTTGGGGCGTAAA
GCCTGGCACCAAGAACGTCCACAACCTCTGGCTCGAGATCTCCGAAGGAGAAACTTCTCTTGCCGATTCCAACCCTCCCATCCGCACCCTTCATGTCCTTTCTCTTCGAA
TTATTGATAAACATCACCGACTTCTCATCGAATCCCACCAGCAACTCTCTGATGGCACCCTACGGAATCGAAATCGACCCTTGTCTGAGAAAATGAAGCCCAATGAGACC
CCTGAATCTGCCGTCTACCGGGCTGTCAAAGAAGAGCTCGGTTCCATTCTTGGCGATTCCGATTGTTCTGAAATTGTGAGGATTGTTCCTGATTCCTATCAAATGAAGAT
TGAAGAGCGCAACTCGGTTTCCTACCCTGGTTTGCCGGCTTGTTACGTTTTGCATTCCATGGATGTTTGGGTGGAAGGTTTACCCGAGGGAGAGTTCTGCACTGTGGAGG
AGGAGGAATATGGAAATTCTGAGGTGACAAGCAATGCGGCCGAGGCTGTGTCCATCAAGAAGCATTTTTGGAAATGGGTTAGACCTGATTCTGTTGATTTTTTAGTTCAC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTCTCACAATTTCCCAACTCCAAATCCTTCTCCTCTCCTCAATCCCTCTCCGAATGGCTTAAACCTCGCCTCCCCTCCGATTCTTTTGCTTCTTGGGGCGTAAA
GCCTGGCACCAAGAACGTCCACAACCTCTGGCTCGAGATCTCCGAAGGAGAAACTTCTCTTGCCGATTCCAACCCTCCCATCCGCACCCTTCATGTCCTTTCTCTTCGAA
TTATTGATAAACATCACCGACTTCTCATCGAATCCCACCAGCAACTCTCTGATGGCACCCTACGGAATCGAAATCGACCCTTGTCTGAGAAAATGAAGCCCAATGAGACC
CCTGAATCTGCCGTCTACCGGGCTGTCAAAGAAGAGCTCGGTTCCATTCTTGGCGATTCCGATTGTTCTGAAATTGTGAGGATTGTTCCTGATTCCTATCAAATGAAGAT
TGAAGAGCGCAACTCGGTTTCCTACCCTGGTTTGCCGGCTTGTTACGTTTTGCATTCCATGGATGTTTGGGTGGAAGGTTTACCCGAGGGAGAGTTCTGCACTGTGGAGG
AGGAGGAATATGGAAATTCTGAGGTGACAAGCAATGCGGCCGAGGCTGTGTCCATCAAGAAGCATTTTTGGAAATGGGTTAGACCTGATTCTGTTGATTTTTTAGTTCAC
TAA
Protein sequenceShow/hide protein sequence
MPLSQFPNSKSFSSPQSLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSNPPIRTLHVLSLRIIDKHHRLLIESHQQLSDGTLRNRNRPLSEKMKPNET
PESAVYRAVKEELGSILGDSDCSEIVRIVPDSYQMKIEERNSVSYPGLPACYVLHSMDVWVEGLPEGEFCTVEEEEYGNSEVTSNAAEAVSIKKHFWKWVRPDSVDFLVH