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HG10008863 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008863
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S acidic ribosomal protein P1
Genome locationChr06:321305..321959
RNA-Seq ExpressionHG10008863
SyntenyHG10008863
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7023305.1 unnamed protein product [Microthlaspi erraticum]8.8e-2769.09Show/hide
Query:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES
        SELACTYAALILHDD I +TAEKISTLV  A + VESYWP LFAKL  K+NIDDLI+N+G     AAAP A AA  S +S A  AA     KKEEV EES
Subjt:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES

Query:  EDDMVFGLFD
        EDDMVFGLFD
Subjt:  EDDMVFGLFD

GFP88745.1 60S acidic ribosomal protein p1 [Phtheirospermum japonicum]4.4e-2666.06Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE
        ELACTYAAL+LHDD I+VTAEKI+TLV  A LTVESYWPSLFAKL  K+NI+DL++N+GS   AA A SA A   S   +A  AAPA  +KKEE  EES+
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE

Query:  DDMVFGLFD
        DDM F LFD
Subjt:  DDMVFGLFD

KAF7816627.1 60S acidic ribosomal protein P1 [Senna tora]4.4e-2667.27Show/hide
Query:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES
        SELAC+YAA+ILHDD I++TAEKI+TLV  A ++VESYWPSLFAKLA KRNIDDLILN GS  A A A +A AA     S+A  AAPA  +KKEE  EES
Subjt:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES

Query:  EDDMVFGLFD
        +DDM F LFD
Subjt:  EDDMVFGLFD

XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]8.2e-3379.09Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEES
        ELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE +EES
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEES

Query:  EDDMVFGLFD
        EDD+VFGLFD
Subjt:  EDDMVFGLFD

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]1.7e-3379.13Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEE
        MST SELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEE

Query:  VMEESEDDMVFGLFD
         +EESEDD+VFGLFD
Subjt:  VMEESEDDMVFGLFD

TrEMBL top hitse value%identityAlignment
A0A5A7QQN7 60S acidic ribosomal protein P11.4e-2566.06Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE
        ELACTYA+LILHDD I+VTAEKI+TLV  A LTVESYWPSLFAKL  K+NI+DLI+N+GS   AA A +A A     S +A  AAPA  +KKEE  EES+
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE

Query:  DDMVFGLFD
        DDM F LFD
Subjt:  DDMVFGLFD

A0A6D2I4R4 Uncharacterized protein4.3e-2769.09Show/hide
Query:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES
        SELACTYAALILHDD I +TAEKISTLV  A + VESYWP LFAKL  K+NIDDLI+N+G     AAAP A AA  S +S A  AA     KKEEV EES
Subjt:  SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEES

Query:  EDDMVFGLFD
        EDDMVFGLFD
Subjt:  EDDMVFGLFD

A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X28.0e-3479.13Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEE
        MST SELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEE

Query:  VMEESEDDMVFGLFD
         +EESEDD+VFGLFD
Subjt:  VMEESEDDMVFGLFD

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X14.0e-3379.09Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEES
        ELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE +EES
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEES

Query:  EDDMVFGLFD
        EDD+VFGLFD
Subjt:  EDDMVFGLFD

A0A6P6VNI6 LOW QUALITY PROTEIN: 60S acidic ribosomal protein P1-like3.6e-2666.97Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE
        EL CTYA+LILHDD I VTAEKI+TLV  A LTVESYWPSLFAKL  KRNIDDLI+N+G      AAP+A AAS     +A  AAPA  +KKEE  EES+
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE

Query:  DDMVFGLFD
        DDM F LFD
Subjt:  DDMVFGLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-24.2e-2452.63Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI+N+G+      AP   AA+ + +  A  AAPA  +KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD

P47955 60S acidic ribosomal protein P14.4e-2150.88Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        M++ SELAC Y+ALILHDD ++VT +KI+ L+  AG++VE +WP LFAK  +  NI  LI N+G+   A AA +A A   + S++A  A    V+ K+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EESEDDM FGLFD
Subjt:  MEESEDDMVFGLFD

P52855 60S acidic ribosomal protein P14.2e-2458.72Show/hide
Query:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE
        ELAC YAALIL DD I++TAEKI+T+V  A + VESYWP+LFAKL  KRN++DLIL++GS   AA      AA+     +A  AAPA  +KKEE  EES+
Subjt:  ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESE

Query:  DDMVFGLFD
        DDM F LFD
Subjt:  DDMVFGLFD

Q8LCW9 60S acidic ribosomal protein P1-11.8e-2253.85Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPV---DKK
        MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+++ESYWP LFAK+A KRN+ DLI+N+G A     AP A AA     ++ G AA AP     KK
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPV---DKK

Query:  EEVMEESEDDMVFGLFD
        +E  EES+ D+ FGLFD
Subjt:  EEVMEESEDDMVFGLFD

Q8LEQ0 60S acidic ribosomal protein P1-32.1e-2354.39Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI+N+G A     AP A AA  +   +A  A  A   KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD

Arabidopsis top hitse value%identityAlignment
AT4G00810.1 60S acidic ribosomal protein family3.0e-2552.63Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI+N+G+      AP   AA+ + +  A  AAPA  +KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD

AT4G00810.2 60S acidic ribosomal protein family3.0e-2552.63Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI+N+G+      AP   AA+ + +  A  AAPA  +KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD

AT5G24510.1 60S acidic ribosomal protein family3.6e-2658.97Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEE-
        MST SELACTYAALILHDD I +TAE IS LV TA + VESYWPSLFAKL  K+NIDDLI+N+G+     A P   AA      +A  +   P +KK E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEE-

Query:  --VMEESEDDMVFGLFD
          + EESEDDM+ GLFD
Subjt:  --VMEESEDDMVFGLFD

AT5G47700.1 60S acidic ribosomal protein family1.5e-2454.39Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI+N+G A     AP A AA  +   +A  A  A   KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD

AT5G47700.2 60S acidic ribosomal protein family1.5e-2454.39Show/hide
Query:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV
        MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI+N+G A     AP A AA  +   +A  A  A   KK+E 
Subjt:  MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEV

Query:  MEESEDDMVFGLFD
         EES+ D+ FGLFD
Subjt:  MEESEDDMVFGLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCTGCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCGTCACTGCCGAGAAGATTTCCACATTGGTGAACACTGCCGGCCT
TACCGTCGAATCATACTGGCCCTCTCTCTTTGCTAAGTTGGCCTCCAAAAGGAACATCGACGATCTCATTCTCAACCTCGGATCTGCTGCGGCTGCAGCTGCTGCTCCCT
CCGCTGAGGCTGCTTCACTCTCTATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGATAAGAAGGAAGAGGTCATGGAAGAGAGCGAGGATGACATGGTCTTC
GGCTTGTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCTGCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCGTCACTGCCGAGAAGATTTCCACATTGGTGAACACTGCCGGCCT
TACCGTCGAATCATACTGGCCCTCTCTCTTTGCTAAGTTGGCCTCCAAAAGGAACATCGACGATCTCATTCTCAACCTCGGATCTGCTGCGGCTGCAGCTGCTGCTCCCT
CCGCTGAGGCTGCTTCACTCTCTATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGATAAGAAGGAAGAGGTCATGGAAGAGAGCGAGGATGACATGGTCTTC
GGCTTGTTTGATTAG
Protein sequenceShow/hide protein sequence
MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVF
GLFD