; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008870 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008870
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUbiquitin
Genome locationChr06:365415..366848
RNA-Seq ExpressionHG10008870
SyntenyHG10008870
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038587 - Ribosomal protein L40e superfamily
IPR029071 - Ubiquitin-like domain superfamily
IPR019956 - Ubiquitin domain
IPR000626 - Ubiquitin-like domain
IPR001975 - Ribosomal protein L40e
IPR011332 - Zinc-binding ribosomal protein
IPR019954 - Ubiquitin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1815065.1 unnamed protein product [Brassica napus]2.9e-6196.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIIIS
        ARLHPRAVNCRKKKCGHSNQV  + +S
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIIIS

KAA8516754.1 hypothetical protein F0562_017048 [Nyssa sinensis]2.2e-6196.03Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIII
        ARLHPRAVNCRKKKCGHSNQV  +++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIII

KAF3671910.1 Ubiquitin-60S ribosomal protein L40-1 [Capsicum annuum]3.8e-6197.58Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDI
        ARLHPRAVNCRKKKCGHSNQV ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDI

KAG4393946.1 hypothetical protein GLYMA_03G197600v4 [Glycine max]2.9e-6192.48Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDFI
        ARLHPRAVNCRKKKCGHSNQV+  ++   +DF+
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDFI

PIA34853.1 hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea]3.8e-6192.42Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF
        ARLHPRAVNCRKKKCGHSNQV   +++   +F
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF

TrEMBL top hitse value%identityAlignment
A0A2G5CUA0 Ubiquitin1.8e-6192.42Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF
        ARLHPRAVNCRKKKCGHSNQV   +++   +F
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF

A0A4D8YPT6 Ubiquitin1.8e-6192.42Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF
        ARLHPRAVNCRKKKCGHSNQV +      +D+
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIIISKAIDF

A0A5J4ZFZ4 Ubiquitin1.1e-6196.03Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKDIII
        ARLHPRAVNCRKKKCGHSNQV  +++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKDIII

I1KAY5 Ubiquitin4.1e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

V4SRQ5 Ubiquitin4.1e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

SwissProt top hitse value%identityAlignment
B9DHA6 Ubiquitin-60S ribosomal protein L40-15.5e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P0CH34 Ubiquitin-60S ribosomal protein L40-15.5e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P0CH35 Ubiquitin-60S ribosomal protein L40-25.5e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P49636 Ubiquitin-60S ribosomal protein L403.2e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCR+KKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

Q42202 Ubiquitin-60S ribosomal protein L40-25.5e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

Arabidopsis top hitse value%identityAlignment
AT1G65350.1 ubiquitin 131.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e3.9e-6497.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

AT3G52590.1 ubiquitin extension protein 13.9e-6497.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

AT4G02890.1 Ubiquitin family protein1.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT4G05320.2 polyubiquitin 101.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATTACGCTGGAAGTCGAGTCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCC
CCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTCGCCGATTACAACATCCAGAAAGAATCAACGCTACACCTCGTTCTAAGGCTTC
GTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGAAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGC
CGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAGGATATTATTATTAGTAAGGCGATTGATTTCATTCTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATTACGCTGGAAGTCGAGTCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCC
CCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTCGCCGATTACAACATCCAGAAAGAATCAACGCTACACCTCGTTCTAAGGCTTC
GTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGAAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGC
CGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAGGATATTATTATTAGTAAGGCGATTGATTTCATTCTTTGCTAA
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNC
RKKKCGHSNQVKDIIISKAIDFILC