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HG10008902 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008902
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
Genome locationChr06:611540..611875
RNA-Seq ExpressionHG10008902
SyntenyHG10008902
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR012875 - Succinate dehydrogenase assembly factor 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042555.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa]1.8e-3781.08Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQGVSSEE REAEKG S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]2.7e-3681.08Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWERKGRC DF
Subjt:  DWERKGRCYDF

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]1.1e-2972.07Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS L+RLF SPP+L+AL AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG   +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]2.8e-3072.07Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS L+RLF SPP+L+AL AV+R+TS S+SR VSSS+NQQPS  EQGV  EE REA KG   +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]2.4e-2971.17Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS L+RLF SPP+L++L AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG   +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

TrEMBL top hitse value%identityAlignment
A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial1.3e-3681.08Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWERKGRC DF
Subjt:  DWERKGRCYDF

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial8.9e-3881.08Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQGVSSEE REAEKG S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial5.2e-3072.07Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS L+RLF SPP+L+AL AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG   +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial1.4e-3072.07Show/hide
Query:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG
        MSS L+RLF SPP+L+AL AV+R+TS S+SR VSSS+NQQPS  EQGV  EE REA KG   +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYG
Subjt:  MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYG

Query:  DWERKGRCYDF
        DWER GRCYDF
Subjt:  DWERKGRCYDF

I3S0H7 Succinate dehydrogenase assembly factor 4, mitochondrial7.1e-1143.52Show/hide
Query:  YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWE
        +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S    E   +E + +D++VD N+   EVGGPKGPEPTRYGDWE
Subjt:  YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWE

Query:  RKGRCYDF
        R GRC DF
Subjt:  RKGRCYDF

SwissProt top hitse value%identityAlignment
Q5VUM1 Succinate dehydrogenase assembly factor 4, mitochondrial2.5e-0544.59Show/hide
Query:  SEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV------DTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
        S QG  SE  +++ K   L +      E    ++E       D N    E GGP+GPEPTRYGDWERKGRC DF
Subjt:  SEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV------DTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF

Q8BTE0 Succinate dehydrogenase assembly factor 4, mitochondrial5.6e-0540.45Show/hide
Query:  LTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDG-EDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
        L ++SL +   S    +P P++Q +     +     G  +  E + +ER+  +    D N    E GGPKGPEPTRYGDWERKGRC DF
Subjt:  LTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDG-EDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF

Q9VLU6 Succinate dehydrogenase assembly factor 4, mitochondrial1.3e-0674.19Show/hide
Query:  TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
        TN    E+GGP GPEPTRYGDWERKGR  DF
Subjt:  TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF

Arabidopsis top hitse value%identityAlignment
AT5G67490.1 unknown protein3.6e-0738.54Show/hide
Query:  AVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVD----TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
        +VS      +SRF+SS +   P P     + + +R+ +   +L Q+     E + E E        NE   E+GGP+GPEPTRYGDWE++GRC DF
Subjt:  AVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVD----TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTC
CAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATG
GTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGAT
TTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTC
CAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATG
GTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGAT
TTTTGA
Protein sequenceShow/hide protein sequence
MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYD
F