; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10008933 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10008933
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 1-like
Genome locationChr06:833172..834838
RNA-Seq ExpressionHG10008933
SyntenyHG10008933
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025525 - hAT-like transposase, RNase-H fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61798.1 hypothetical protein VITISV_044291 [Vitis vinifera]1.6e-2040.67Show/hide
Query:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPL
        +Y +S++ LL++ A+NMK KY+  W + + +N LLYV +VLDPRYKL+FV F    LY++E + ++  ++VD+ R LY++Y+     +E+       QP 
Subjt:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPL

Query:  TEDAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIEIADETFDIL
          + GE+DD ++   FT++L E+ N    SELD YLS   E  D+ FDIL
Subjt:  TEDAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIEIADETFDIL

RLN15539.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Panicum miliaceum]5.0e-1434.19Show/hide
Query:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPL
        E +  ++  L++ A +MK+K++  W+H  N N+LL++ ++LDPRYKLQ++ F L L+Y  +   E+ +KI      L+  + +T N  S     S   P+
Subjt:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPL

Query:  TEDAGEEDDED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD
          +  EED+E+     AS F +++  +E ++  SEL KYL+   E   + FDILD
Subjt:  TEDAGEEDDED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD

XP_023892692.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Quercus suber]1.6e-1233.55Show/hide
Query:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTED
        S S++++L N A +M+ KY+  WE+ +N NFLLYV +VLDP YKL+++ F+   +YE  ++ E+   +      LY  Y   +  + +A  S+ Q   E 
Subjt:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTED

Query:  AGEEDDED----YASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL
          ++++ED    +A  + KYL E ++    SE D+ L+   E +++  FDIL
Subjt:  AGEEDDED----YASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL

XP_028081659.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Camellia sinensis]3.6e-1234.39Show/hide
Query:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQ-PL
        + S+S +++L+N A  MK+KY+  WE+ +N NFLLYV +VLDPRYKL ++ F+ + +YE ++   ++ ++      L++ Y   N    +A +   Q P 
Subjt:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQ-PL

Query:  TEDAGEEDDED----YASMFTKYLIEQ---DNKISELDKYL-SHPIEIADETFDILD
          +  EE++ED    +AS +  +L  +   +NK SEL+KYL    ++     FDIL+
Subjt:  TEDAGEEDDED----YASMFTKYLIEQ---DNKISELDKYL-SHPIEIADETFDILD

XP_030936903.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Quercus lobata]2.6e-1534.87Show/hide
Query:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-
        SRS++++L N A +M+ KY+  WE+ +N NFLLYV +VLDPRYKL+++ F+   +YE+ ++ E+   +    + LY  Y   +  + IA  S+ Q   E 
Subjt:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-

Query:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL
           D  E+D + ++  + K+L E ++    SE+D++L+   E + +  FDIL
Subjt:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL

TrEMBL top hitse value%identityAlignment
A0A3L6S4I0 Zinc finger BED domain-containing protein RICESLEEPER 1-like2.4e-1434.19Show/hide
Query:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPL
        E +  ++  L++ A +MK+K++  W+H  N N+LL++ ++LDPRYKLQ++ F L L+Y  +   E+ +KI      L+  + +T N  S     S   P+
Subjt:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPL

Query:  TEDAGEEDDED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD
          +  EED+E+     AS F +++  +E ++  SEL KYL+   E   + FDILD
Subjt:  TEDAGEEDDED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD

A0A3L6T191 Zinc finger BED domain-containing protein RICESLEEPER 1-like3.8e-1234.25Show/hide
Query:  LANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPLTEDAGEEDD
        L++ A +MK+K++  W+   N N+LL++ ++LDPRYKLQ++ F L L Y  +   E+ +K       L+  Y +T N  S     S   P+  +  EED+
Subjt:  LANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDY-QTSNVESEIACTSMDQPLTEDAGEEDD

Query:  ED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD
        E+     AS F +++  +E +   SEL +YL+   E   + FDILD
Subjt:  ED----YASMFTKYL--IEQDNKISELDKYLSHPIEIADETFDILD

A0A7N2KQS5 BED-type domain-containing protein5.7e-1635.53Show/hide
Query:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-
        SRS++++L N A +M+ KY+  WE+ +N NFLLYV +VLDPRYKL+++ F+   +YE+ ++ E+   +    + LY  Y   +  + IA  S+ Q   E 
Subjt:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-

Query:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL
           D  E+D + +A  + K+L E ++    SE+D++L+   E + +  FDIL
Subjt:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL

A0A7N2MJW3 Uncharacterized protein5.7e-1635.53Show/hide
Query:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-
        SRS++++L N A +M+ KY+  WE+ +N NFLLYV +VLDPRYKL+++ F+   +YE+ ++ E+   +    + LY  Y   +  + IA  S+ Q   E 
Subjt:  SRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTE-

Query:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL
           D  E+D + +A  + K+L E ++    SE+D++L+   E + +  FDIL
Subjt:  ---DAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIE-IADETFDIL

A5BUV6 BED-type domain-containing protein7.7e-2140.67Show/hide
Query:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPL
        +Y +S++ LL++ A+NMK KY+  W + + +N LLYV +VLDPRYKL+FV F    LY++E + ++  ++VD+ R LY++Y+     +E+       QP 
Subjt:  EYSRSDNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPL

Query:  TEDAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIEIADETFDIL
          + GE+DD ++   FT++L E+ N    SELD YLS   E  D+ FDIL
Subjt:  TEDAGEEDDEDYASMFTKYLIEQDN--KISELDKYLSHPIEIADETFDIL

SwissProt top hitse value%identityAlignment
Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 32.2e-0426.03Show/hide
Query:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPLTEDAG
        ++ +  +TA+ M  +++  W   ++ N +L + +V+DPR+K++ V F+ S ++  E + + +K + D    LY++Y T    +  A  T     +T   G
Subjt:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIA-CTSMDQPLTEDAG

Query:  EE--DDEDYASMFTKYLIEQDNKISELDKYLSHPIEIADETFDILD
        +E  D + Y S     +      ISEL++YL   +    + F+IL+
Subjt:  EE--DDEDYASMFTKYLIEQDNKISELDKYLSHPIEIADETFDILD

Q9M2N5 Zinc finger BED domain-containing protein DAYSLEEPER1.7e-0426.21Show/hide
Query:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTEDAGE
        ++  +   A+ M+ K +  W    + + +L + +V+DPR+K++ V F+ S ++ E+    I K + D    L+ +Y               Q  T + G+
Subjt:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTEDAGE

Query:  EDDEDYASMFTKYLIEQ--DNKISELDKYLSHPIEIADETFDILD
         D     S F  Y++E    N  SELD+YL   +    + FD+LD
Subjt:  EDDEDYASMFTKYLIEQ--DNKISELDKYLSHPIEIADETFDILD

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain1.2e-0526.21Show/hide
Query:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTEDAGE
        ++  +   A+ M+ K +  W    + + +L + +V+DPR+K++ V F+ S ++ E+    I K + D    L+ +Y               Q  T + G+
Subjt:  DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTEDAGE

Query:  EDDEDYASMFTKYLIEQ--DNKISELDKYLSHPIEIADETFDILD
         D     S F  Y++E    N  SELD+YL   +    + FD+LD
Subjt:  EDDEDYASMFTKYLIEQ--DNKISELDKYLSHPIEIADETFDILD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTAGTACTGGGGAGGACCCTAACATTGCAAATAAATGTGAGTCGAATCCATTGAGTCCGATAAGAGAGAACAAACGTATTAGGACTTCTGGGGCTCACGATCA
TTTTAATGAAGTTGATAATGGGGATTCTGATTGGCCAAAGCCAACAAAGTGGAATATCATTGCATATCCATGTGATGATGAACAAAAGAAAAACCCCACCAAAGTAGAGC
AAATAATACTTAACTGTGAAAAGCATCCAAGTAGAAAATGTAACTCGAAGCAAAAGAGGTTGCTTGATAGTCAGTCAGAGGATAAAGAGGGAGAAGAGTATTCAAGATCT
GACAACTCTCTCTTGGCTAACACCGCAAGAAATATGAAGGTGAAGTATGAAACATTGTGGGAGCACAATGAAAACACAAATTTTCTCTTGTATGTTCCCATTGTACTTGA
CCCCCGATACAAGCTCCAATTTGTATCCTTCACTCTGTCACTTTTGTATGAGGAGGAAAGGTCAAATGAAATTCTTAAGAAAATTGTGGATATGACAAGAAGTTTATATA
ATGACTACCAAACTTCAAATGTGGAGAGTGAGATTGCATGTACATCTATGGATCAACCATTAACGGAAGACGCGGGAGAAGAAGATGACGAAGATTATGCCTCTATGTTT
ACTAAATACTTGATCGAGCAAGATAACAAGATATCAGAACTAGATAAGTATTTATCTCATCCAATTGAGATAGCCGATGAAACATTTGATATATTAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTAGTACTGGGGAGGACCCTAACATTGCAAATAAATGTGAGTCGAATCCATTGAGTCCGATAAGAGAGAACAAACGTATTAGGACTTCTGGGGCTCACGATCA
TTTTAATGAAGTTGATAATGGGGATTCTGATTGGCCAAAGCCAACAAAGTGGAATATCATTGCATATCCATGTGATGATGAACAAAAGAAAAACCCCACCAAAGTAGAGC
AAATAATACTTAACTGTGAAAAGCATCCAAGTAGAAAATGTAACTCGAAGCAAAAGAGGTTGCTTGATAGTCAGTCAGAGGATAAAGAGGGAGAAGAGTATTCAAGATCT
GACAACTCTCTCTTGGCTAACACCGCAAGAAATATGAAGGTGAAGTATGAAACATTGTGGGAGCACAATGAAAACACAAATTTTCTCTTGTATGTTCCCATTGTACTTGA
CCCCCGATACAAGCTCCAATTTGTATCCTTCACTCTGTCACTTTTGTATGAGGAGGAAAGGTCAAATGAAATTCTTAAGAAAATTGTGGATATGACAAGAAGTTTATATA
ATGACTACCAAACTTCAAATGTGGAGAGTGAGATTGCATGTACATCTATGGATCAACCATTAACGGAAGACGCGGGAGAAGAAGATGACGAAGATTATGCCTCTATGTTT
ACTAAATACTTGATCGAGCAAGATAACAAGATATCAGAACTAGATAAGTATTTATCTCATCCAATTGAGATAGCCGATGAAACATTTGATATATTAGATTGA
Protein sequenceShow/hide protein sequence
MDRSTGEDPNIANKCESNPLSPIRENKRIRTSGAHDHFNEVDNGDSDWPKPTKWNIIAYPCDDEQKKNPTKVEQIILNCEKHPSRKCNSKQKRLLDSQSEDKEGEEYSRS
DNSLLANTARNMKVKYETLWEHNENTNFLLYVPIVLDPRYKLQFVSFTLSLLYEEERSNEILKKIVDMTRSLYNDYQTSNVESEIACTSMDQPLTEDAGEEDDEDYASMF
TKYLIEQDNKISELDKYLSHPIEIADETFDILD