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HG10009049 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009049
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase
Genome locationChr06:2009933..2010481
RNA-Seq ExpressionHG10009049
SyntenyHG10009049
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050510.1 hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa]5.9e-0943.2Show/hide
Query:  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTK
        LDV IF ++P E +  L  LPP+P D++     SP   TS  SS  I+  HP +++    NL  L   L + DL V+ +    P  K K+      K+ K
Subjt:  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTK

Query:  LQRETQGLYSSINYDKSATLAIREG
        LQRE Q L+ SINYDKSATLAI EG
Subjt:  LQRETQGLYSSINYDKSATLAIREG

KAA0063298.1 hypothetical protein E6C27_scaffold205G001210 [Cucumis melo var. makuwa]1.2e-0450Show/hide
Query:  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL
        D +P Q P P  ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  K+ KL
Subjt:  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL

KAA0064805.1 DNA-directed RNA polymerase I subunit 2 [Cucumis melo var. makuwa]9.8e-0461.7Show/hide
Query:  PSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREGF
        PS  PPPK KKP  A  K+ KLQRE Q L SSI Y KS TLA R+G+
Subjt:  PSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREGF

TYK05133.1 hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa]4.1e-1849.22Show/hide
Query:  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGK
        H L+  +F + P E +LP+  LPP+P D  SP Q P P       S  P     P++ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  +
Subjt:  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGK

Query:  KTKLQRETQGLYSSINYDKSATLAIREG
        + KLQRE Q L SSI YDKS  LA REG
Subjt:  KTKLQRETQGLYSSINYDKSATLAIREG

TYK31477.1 hypothetical protein E5676_scaffold455G007930 [Cucumis melo var. makuwa]4.4e-0450.75Show/hide
Query:  PDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL
        P +ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  K+ KL
Subjt:  PDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL

TrEMBL top hitse value%identityAlignment
A0A0A0LHM7 Uncharacterized protein5.4e-0839.46Show/hide
Query:  KNLPFIGSDTEGYLSSPHPLDVT---IFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMA
        KN P   SD E YL+SP     T   I   +           P   P + P    SP   + PL+  P     P+SST  P +L D+A +L  H LCVMA
Subjt:  KNLPFIGSDTEGYLSSPHPLDVT---IFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMA

Query:  IPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREG
        +PS  P  K KKP     K+ KLQR+ Q L SSI YDK+++L  R+G
Subjt:  IPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREG

A0A0A0LW63 Uncharacterized protein5.6e-0538.52Show/hide
Query:  PLDVTIFDDEPV----EDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKAT
        P+  +I   +PV    +  LPL  LPP+  D++    P   +S    S +P +  + T+ST P   L DLA+LL+ H LC  A P      K+ K    T
Subjt:  PLDVTIFDDEPV----EDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKAT

Query:  GKKTKLQRETQGLYSSINYDKS
         K+ K+QRE Q L+SSI+YDKS
Subjt:  GKKTKLQRETQGLYSSINYDKS

A0A5A7U5M3 Uncharacterized protein2.9e-0943.2Show/hide
Query:  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTK
        LDV IF ++P E +  L  LPP+P D++     SP   TS  SS  I+  HP +++    NL  L   L + DL V+ +    P  K K+      K+ K
Subjt:  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTK

Query:  LQRETQGLYSSINYDKSATLAIREG
        LQRE Q L+ SINYDKSATLAI EG
Subjt:  LQRETQGLYSSINYDKSATLAIREG

A0A5A7V6T7 Uncharacterized protein5.6e-0550Show/hide
Query:  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL
        D +P Q P P  ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  K+ KL
Subjt:  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKL

A0A5D3BZG4 Uncharacterized protein2.0e-1849.22Show/hide
Query:  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGK
        H L+  +F + P E +LP+  LPP+P D  SP Q P P       S  P     P++ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  +
Subjt:  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGK

Query:  KTKLQRETQGLYSSINYDKSATLAIREG
        + KLQRE Q L SSI YDKS  LA REG
Subjt:  KTKLQRETQGLYSSINYDKSATLAIREG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCCCCTCGTCCTCACAACCCTCTCTCCACTATCCCTTTTCGAGAGAAACCCACTTTTCTCCATGCTGGCACATCTTTTTCCACATCAACAAATAAAAAAAATCT
TCCTTTCATTGGTTCGGATACCGAAGGATACCTCTCTAGTCCCCATCCTTTGGATGTGACTATCTTTGATGATGAGCCAGTCGAAGATAATCTACCTTTATGCACCCTTC
CCCCTCTCCCACCCGACATCAGCCCTAGACAAGGCCCTTCACCCGACAACTCGACCTCTCCCCTTTCCTCTTATCCTATTCACCAAGCTCACCCGACCTCCTCAACAAAC
CCGCCATTCAACCTAAATGATTTAGCAACTCTCTTATCAAACCATGATTTGTGTGTTATGGCCATTCCATCTTCCCATCCACCTCCAAAAATAAAAAAACCAACAAAAGC
AACAGGAAAAAAAACCAAACTCCAAAGAGAGACTCAAGGCCTTTATTCATCGATCAACTATGACAAATCAGCTACCTTGGCGATTCGGGAGGGCTTCTTGACAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCCCCTCGTCCTCACAACCCTCTCTCCACTATCCCTTTTCGAGAGAAACCCACTTTTCTCCATGCTGGCACATCTTTTTCCACATCAACAAATAAAAAAAATCT
TCCTTTCATTGGTTCGGATACCGAAGGATACCTCTCTAGTCCCCATCCTTTGGATGTGACTATCTTTGATGATGAGCCAGTCGAAGATAATCTACCTTTATGCACCCTTC
CCCCTCTCCCACCCGACATCAGCCCTAGACAAGGCCCTTCACCCGACAACTCGACCTCTCCCCTTTCCTCTTATCCTATTCACCAAGCTCACCCGACCTCCTCAACAAAC
CCGCCATTCAACCTAAATGATTTAGCAACTCTCTTATCAAACCATGATTTGTGTGTTATGGCCATTCCATCTTCCCATCCACCTCCAAAAATAAAAAAACCAACAAAAGC
AACAGGAAAAAAAACCAAACTCCAAAGAGAGACTCAAGGCCTTTATTCATCGATCAACTATGACAAATCAGCTACCTTGGCGATTCGGGAGGGCTTCTTGACAAACTAA
Protein sequenceShow/hide protein sequence
MLSPRPHNPLSTIPFREKPTFLHAGTSFSTSTNKKNLPFIGSDTEGYLSSPHPLDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTN
PPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREGFLTN