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HG10009072 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009072
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationChr06:2204299..2204651
RNA-Seq ExpressionHG10009072
SyntenyHG10009072
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1578.08Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        MAVVA K+ F GV   V  +LAML  A AQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]7.7e-1678.08Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        MAVVA K+ F GV F V  +LAM+  A AQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]3.0e-2085.14Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]3.3e-1982.43Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.2e-1169.74Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        M VVAY     GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAY LMLLAL+LTYIIH A+L ISL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein1.5e-2085.14Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

A0A1S3ATI9 arabinogalactan peptide 22-like1.6e-1982.43Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

A0A5D3C2F1 Arabinogalactan peptide 22-like1.6e-1982.43Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

A0A6J1CXM0 arabinogalactan peptide 22-like7.3e-1275.41Show/hide
Query:  VLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        V FV+   L + + A  +S+SPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
Subjt:  VLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

A0A6J1K4A3 arabinogalactan peptide 22-like9.5e-1271.43Show/hide
Query:  MAVVAY-KVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL
        M VVAY KV + GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAY LMLLAL+LTYIIH A+L ISL
Subjt:  MAVVAY-KVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.7e-0855.71Show/hide
Query:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

Q8L9T8 Arabinogalactan protein 411.1e-0762.07Show/hide
Query:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Subjt:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 222.2e-0550Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAY LM++AL LTY IH
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

Q9M373 Arabinogalactan protein 204.7e-0861.29Show/hide
Query:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.3e-0955.71Show/hide
Query:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

AT3G61640.1 arabinogalactan protein 203.3e-0961.29Show/hide
Query:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 417.5e-0962.07Show/hide
Query:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Subjt:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 221.6e-0650Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAY LM++AL LTY IH
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACC
TCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGCATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTT
TATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACC
TCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGCATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTT
TATAA
Protein sequenceShow/hide protein sequence
MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL