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HG10009135 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009135
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription initiation factor TFIID subunit 1 isoform X1
Genome locationChr06:2860145..2861052
RNA-Seq ExpressionHG10009135
SyntenyHG10009135
Gene Ontology termsGO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR036741 - TAFII-230 TBP-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1861909.1 hypothetical protein Lal_00026389 [Lupinus albus]8.2e-0659.18Show/hide
Query:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +  DE +YE+ D G RF G MF  VDNS DLDA+Y DED KE+L+ALA+
Subjt:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
XP_023004897.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima]1.4e-0563.83Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA  G R  G MF  VDNS DLDA+Y DED KE+LAALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
XP_030539297.1 transcription initiation factor TFIID subunit 1 isoform X2 [Rhodamnia argentea]1.1e-0561.22Show/hide
Query:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        M  DE +YE+  SG RF G MF  VDNS DLD +Y DED KE+LAALA+
Subjt:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
XP_038899362.1 transcription initiation factor TFIID subunit 1 isoform X1 [Benincasa hispida]1.6e-0665.96Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA+ G RF G MF  VDNS DLDA+Y DED KE+LAALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
XP_038899368.1 transcription initiation factor TFIID subunit 1 isoform X2 [Benincasa hispida]1.6e-0665.96Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA+ G RF G MF  VDNS DLDA+Y DED KE+LAALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
TrEMBL top hitse value%identityAlignment
A0A1S3C886 transcription initiation factor TFIID subunit 1 isoform X16.8e-0663.83Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA  G RF G MF  VDNS DLDA+Y DED KE+L ALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
A0A6A4Q0D9 Putative chromatin remodeler Bromodomain family6.8e-0663.04Show/hide
Query:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        DE +YE+ D G RF G MF  VDNS DLDA+Y DED KE+L+ALA+
Subjt:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
A0A6A5LMG6 Uncharacterized protein4.0e-0659.18Show/hide
Query:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +  DE +YE+ D G RF G MF  VDNS DLDA+Y DED KE+L+ALA+
Subjt:  MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
A0A6J1H5J5 transcription initiation factor TFIID subunit 1 isoform X16.8e-0663.83Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA  G R  G MF  VDNS DLDA+Y DED KE+LAALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
A0A6J1L0S9 transcription initiation factor TFIID subunit 1 isoform X16.8e-0663.83Show/hide
Query:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        +D+ DYEDA  G R  G MF  VDNS DLDA+Y DED KE+LAALA+
Subjt:  KDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
SwissProt top hitse value%identityAlignment
Q67W65 Transcription initiation factor TFIID subunit 16.5e-0654.35Show/hide
Query:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        D+ DY++   G  F G MF  VD+S DLDA+Y DED KE+L ALA+
Subjt:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
Q8LRK9 Transcription initiation factor TFIID subunit 15.5e-0554.35Show/hide
Query:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        D+ +YED   G    G +F  VDNS DLDA+Y DED KE+L+ALA+
Subjt:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
Arabidopsis top hitse value%identityAlignment
AT1G32750.1 HAC13 protein (HAC13)3.9e-0654.35Show/hide
Query:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN
        D+ +YED   G    G +F  VDNS DLDA+Y DED KE+L+ALA+
Subjt:  DEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAAAGATGAAGTTGACTATGAGGATGCTGACAGTGGCATTCGATTTCAAGGGGTTATGTTTAAAATTGTGGATAATTCTGATGATCTTGATGCCAATTATTTTGA
TGAAGATGTGAAGGAAAACCTGGCTGCACTGGCTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCAAAGATGAAGTTGACTATGAGGATGCTGACAGTGGCATTCGATTTCAAGGGGTTATGTTTAAAATTGTGGATAATTCTGATGATCTTGATGCCAATTATTTTGA
TGAAGATGTGAAGGAAAACCTGGCTGCACTGGCTAATTAA
Protein sequenceShow/hide protein sequence
MTKDEVDYEDADSGIRFQGVMFKIVDNSDDLDANYFDEDVKENLAALAN