; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009142 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009142
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionYqgFc domain-containing protein
Genome locationChr06:2935350..2937075
RNA-Seq ExpressionHG10009142
SyntenyHG10009142
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159849.1 uncharacterized protein LOC111026145 [Momordica charantia]1.2e-7584Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYVKPLN+FRDLL RN LERGR LGLDVGDKYVGLAVSDPDN IASPLSVL+RKKTKMHLMA D QR+ISELSLAGFIVGYP  RQ RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPEL
        DDLCKTG LEGVKYTFWDECFTSK         NVELLIKPL+LPPVLSKT++DKFAAVGILQGYLD+ NRRPEL
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPEL

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]3.4e-7885.31Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGR LGLDVGDKYVGLAVSDPDNKIASPLSVL RKKT MHLMA DFQR+ISELSL+GFIVGYP   Q RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPLKLPP+LSKT+IDKFAAVGILQGYLDH NRRPEL+E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]1.5e-7885.88Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGR LGLDVGDKYVGLAVSDPDNKIASPLSVL RKKT MHLMA DFQR+ISELSL+GFIVGYP   Q RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPLKLPP+LSKT+IDKFAAVGILQGYLDH NRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

XP_023533829.1 uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]7.7e-7885.31Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGR LGLDVGDKYVGLAVSDPDNKIASPLSVL RKKT MHLMA DFQR+ISELSL+GFIVGYP   Q RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPLKLPP+LSKT+IDKFAAVGILQ YLDH NRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]2.4e-7986.44Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYVKPLNLFRDLLKRN LE GRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDF+R+IS+ SLAGFIVGYPS R  RNPDAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        D+LCKTGKLE VKYTFWDECFTSK         NVELLIKPLKLPP+LSKTV+DKFAAVGILQGYLD+ NRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein5.2e-7279.66Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PL LFRDL KR+ALE GRLLGLDVGDKYVGLAVSDPDNKIA PLSVL+RKKT M LMA+DFQ++ISE SLAGFIVGYP  R   NPDA+QVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPL L P +SKT+IDKFAAVGILQGYLD+ NRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X12.3e-6775.71Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYVKP  LFRDLLKR+ L+  RLLGLDVGDKYVGLAVSDPDNKIASPLSVL+RKK  M LMAEDFQ++ISE SLAGFIVGYP  R  +N +A+QVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDE FTSK         NVE +IKPL L P +SKT++DKFAAVGILQGYLD+ NRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

A0A6J1E3H7 uncharacterized protein LOC1110261455.9e-7684Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYVKPLN+FRDLL RN LERGR LGLDVGDKYVGLAVSDPDN IASPLSVL+RKKTKMHLMA D QR+ISELSLAGFIVGYP  RQ RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPEL
        DDLCKTG LEGVKYTFWDECFTSK         NVELLIKPL+LPPVLSKT++DKFAAVGILQGYLD+ NRRPEL
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPEL

A0A6J1H0B7 uncharacterized protein LOC1114592531.7e-7885.31Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGR LGLDVGDKYVGLAVSDPDNKIASPLSVL RKKT MHLMA DFQR+ISELSL+GFIVGYP   Q RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPLKLPP+LSKT+IDKFAAVGILQGYLDH NRRPEL+E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

A0A6J1K3L4 uncharacterized protein LOC1114908577.5e-7985.88Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGR LGLDVGDKYVGLAVSDPDNKIASPLSVL RKKT MHLMA DFQR+ISELSL+GFIVGYP   Q RN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSK         NVELLIKPLKLPP+LSKT+IDKFAAVGILQGYLDH NRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEE

SwissProt top hitse value%identityAlignment
B0K0Q3 Putative pre-16S rRNA nuclease3.4e-1235.62Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGR-NPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF
        R++GLDVGDK +G+A+SD    IA  L+ + R   K     E  ++II+E  +   IVG P +  G   P   +V  F++ L    +   +    WDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGR-NPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLD
        T+ V A         +LI+   +     K VIDK AAV ILQ YLD
Subjt:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLD

B0K996 Putative pre-16S rRNA nuclease2.6e-1235.62Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGR-NPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF
        R++GLDVGDK +G+A+SD    IA  L+ + R   K     E  ++II+E  +   IVG P +  G   P   +V  F++ L    +   +    WDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGR-NPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLD
        T+ V A         +LI+   +     K VIDK AAV ILQ YLD
Subjt:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLD

B6IN25 Putative pre-16S rRNA nuclease1.4e-1333.54Show/hide
Query:  LKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGV
        LK +    GRL+GLD+G+K +GLAVSDP   +ASP+  +  ++TK    A++  R + +  +   +VG P +  G   P    V+ F   L +  +L G 
Subjt:  LKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGV

Query:  --KYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR
          +  FWDE    ++S S+     VE ++    +       V+DK AA  ILQG LD L +
Subjt:  --KYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR

Q1QL26 Putative pre-16S rRNA nuclease3.4e-1234.44Show/hide
Query:  ERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGVKYTFWD
        ERG L+GLD+G K +G+AVSDPD ++A+ +  L RK       A     I  E + AGF++G P +  G   P A   + F  +L    +L  +    WD
Subjt:  ERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGVKYTFWD

Query:  ECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHL
        E          L+   VE  +  + +       VID+ AA+ ILQG LD L
Subjt:  ECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHL

Q3AEN4 Putative pre-16S rRNA nuclease1.2e-1235.33Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF
        ++LGLDVGDK +G+A+SD     A  L+V+ R   K  L  E+ ++II    +   ++GYP +  G   P A  VK F  +L    K  G+K  FWDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQG-RNPDAVQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR
                L+    E L+    +     K VIDK AA  IL GYL++ ++
Subjt:  TSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-4754.97Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI
        MKYVKPL+L  + LK      GR LGLDVGDKYVGLA+SDP N +ASPLSVL+RKK+ + LMA DFQ ++   S++G +VGYP  +     D V V +FI
Subjt:  MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR
        ++L KT KL+ VKYT+WDE  +SK          VEL++KPL L PV  KT++DK AAV ILQ YLD+ NR
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACGTGAAGCCATTGAACTTGTTTCGTGATTTGTTGAAGAGAAATGCTCTTGAACGTGGCCGTTTGCTCGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGC
CGTCTCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGATCAGGAAGAAGACTAAAATGCATTTGATGGCTGAGGATTTTCAGAGAATTATCTCTGAATTGT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTCCCATAGACAAGGGCGCAACCCGGATGCTGTGCAAGTGAAGATTTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAAGTTAGTGCATCTAGTTTGGCCCTTCCTAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCCCCCGT
TTTGTCAAAGACAGTAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGATACTTGGATCATCTTAACAGAAGACCGGAATTGGAAGAGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTACGTGAAGCCATTGAACTTGTTTCGTGATTTGTTGAAGAGAAATGCTCTTGAACGTGGCCGTTTGCTCGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGC
CGTCTCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGATCAGGAAGAAGACTAAAATGCATTTGATGGCTGAGGATTTTCAGAGAATTATCTCTGAATTGT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTCCCATAGACAAGGGCGCAACCCGGATGCTGTGCAAGTGAAGATTTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAAGTTAGTGCATCTAGTTTGGCCCTTCCTAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCCCCCGT
TTTGTCAAAGACAGTAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGATACTTGGATCATCTTAACAGAAGACCGGAATTGGAAGAGTGGTAG
Protein sequenceShow/hide protein sequence
MKYVKPLNLFRDLLKRNALERGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMHLMAEDFQRIISELSLAGFIVGYPSHRQGRNPDAVQVKIFIDDLCKTGKLE
GVKYTFWDECFTSKVSASSLALPNVELLIKPLKLPPVLSKTVIDKFAAVGILQGYLDHLNRRPELEEW