CuGenDBv2

Gene ID	HG10009262
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal L22e protein family
Genome location	Chr06:4142535..4144598
RNA-Seq Expression	HG10009262
Synteny	HG10009262
Gene Ontology terms	GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039677.1 uncharacterized protein E6C27_scaffold558G00080 [Cucumis melo var. makuwa]

7.8e-118

95.85

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Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFTATTIHLPS+SI  RSRP PQTITC+GWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY+TA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

XP_004147583.2 uncharacterized protein LOC101214026 [Cucumis sativus]

1.5e-113

93.78

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFT TTIHLPS+SI  RSR  PQTITCVGWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRK LRESRV P NVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFS VKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDM+ERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

XP_008437135.1 PREDICTED: uncharacterized protein LOC103482648 [Cucumis melo]

3.9e-117

95.44

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFTATTIHLPS+SI  RSRP PQTITC+GWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRV PDNVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY+TA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

XP_022958721.1 uncharacterized protein LOC111459862 [Cucurbita moschata]

1.4e-111

90.46

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAAL FGFTATTIH+ S+SILTR+RPNP+TITCVGWDPEG+FG PQTGHIAR EFKRRLE+DAEAREAFER VREEKERR+ LR SRV P+NVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRL EEFFS +KLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQ GNQK AAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

XP_038874696.1 uncharacterized protein LOC120067243 [Benincasa hispida]

2.0e-121

97.51

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Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFTATTIH PSSSILTRSRP+PQTITC+GWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRV PDNVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKI9 Uncharacterized protein

7.4e-114

93.78

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFT TTIHLPS+SI  RSR  PQTITCVGWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRK LRESRV P NVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFS VKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDM+ERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

A0A1S3AT96 uncharacterized protein LOC103482648

1.9e-117

95.44

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFTATTIHLPS+SI  RSRP PQTITC+GWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRV PDNVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY+TA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

A0A5A7TDT6 Uncharacterized protein

3.8e-118

95.85

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAALSFGFTATTIHLPS+SI  RSRP PQTITC+GWDPEGLFG+PQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQ ELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY+TA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

A0A6J1H2V9 uncharacterized protein LOC111459862

6.9e-112

90.46

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAAL FGFTATTIH+ S+SILTR+RPNP+TITCVGWDPEG+FG PQTGHIAR EFKRRLE+DAEAREAFER VREEKERR+ LR SRV P+NVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRL EEFFS +KLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQ GNQK AAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

A0A6J1KA41 uncharacterized protein LOC111491485

3.8e-110

89.63

Show/hide

Query:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF
        MAAL FGFTATTIH+ S+SILTR+RP P+TITCVGWDPEG+FG PQTGHIAR EFKRRLE+DAEAREAFE  VREEKERR+ LR SRV P+NVTGL+EYF
Subjt:  MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYF

Query:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
        LDTEAQDIEFEIARLRPRL EEFFS +KLELGELRFAV KTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE
Subjt:  LDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNE

Query:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
        LNRSLLALLDENIANAQ GNQK AAAFMEKVRGAVLKYMTA
Subjt:  LNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G62780.1 unknown protein

4.1e-80

65.7

Show/hide

Query:  MAALSFGF--TATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVE
        MA LSFG    ATT+       + R       ITC  WDP+G+ G  QTGHIAR EFKRRLE+D+EAREAF++ +REEKERR+ALR+SRV PD    L+E
Subjt:  MAALSFGF--TATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVE

Query:  YFLDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVER
        YFLDTEAQ+IE+EIARLR RLN+EFF+ ++LE+G++RFAVTKT  +EDR+IELE LQKALEEGIEAYDKMQ EL+ A   LTK+LTS D+K TLLDMVE+
Subjt:  YFLDTEAQDIEFEIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVER

Query:  NELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT
        N++NRSLLALLDENIANA  GNQK+A  +MEK+R +VLKY+T
Subjt:  NELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCTCTTAGCTTCGGCTTTACTGCCACCACCATCCACCTTCCATCAAGTTCTATTCTCACCCGCTCTCGCCCCAATCCCCAGACCATAACCTGCGTCGGATGGGA
CCCAGAAGGTCTCTTCGGACGGCCTCAGACCGGCCACATCGCTCGAAATGAGTTCAAGAGGCGGCTGGAGAAGGACGCCGAAGCTCGCGAGGCTTTCGAGCGCCACGTCC
GGGAAGAGAAGGAGCGCCGCAAAGCGCTTCGAGAGTCTCGTGTGACTCCGGACAATGTGACTGGCCTTGTCGAGTATTTTCTTGATACTGAAGCTCAGGATATTGAATTT
GAAATCGCCAGGCTGAGACCCAGGCTGAACGAGGAGTTTTTTTCACATGTTAAACTTGAGCTGGGTGAGCTTAGATTTGCTGTTACAAAAACTGAGGCCATGGAAGATAG
AGTGATTGAGTTGGAAGCATTACAGAAAGCACTTGAAGAAGGAATAGAAGCCTATGATAAAATGCAAGGGGAACTGGTAAAGGCAAGGGAAGGCTTAACCAAAATTTTAA
CATCAAAGGATGTAAAAGCTACTTTGCTAGACATGGTAGAGCGAAACGAGCTCAATAGATCGTTACTCGCCCTTCTCGACGAAAACATAGCCAATGCACAAATGGGTAAC
CAGAAACAAGCTGCTGCTTTCATGGAAAAGGTTCGAGGGGCAGTTCTCAAGTACATGACTGCGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAALSFGFTATTIHLPSSSILTRSRPNPQTITCVGWDPEGLFGRPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKALRESRVTPDNVTGLVEYFLDTEAQDIEF
EIARLRPRLNEEFFSHVKLELGELRFAVTKTEAMEDRVIELEALQKALEEGIEAYDKMQGELVKAREGLTKILTSKDVKATLLDMVERNELNRSLLALLDENIANAQMGN
QKQAAAFMEKVRGAVLKYMTA

HG10009262 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome