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HG10009271 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009271
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionthylakoid lumenal protein TL20.3, chloroplastic
Genome locationChr06:4217369..4219450
RNA-Seq ExpressionHG10009271
SyntenyHG10009271
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147585.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X1 [Cucumis sativus]2.5e-2677.65Show/hide
Query:  KSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        K     S+ +P    ++DCSERKHIGK TEPKRW+KLVSTALAAAAVI F+SGMPSVAELNKYEADTRGEFGIGSAAQ+GSADLR
Subjt:  KSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

XP_022969873.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X1 [Cucurbita maxima]5.6e-2692.65Show/hide
Query:  DCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        DCSERKHIGK +EPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  DCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

XP_022969876.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X3 [Cucurbita maxima]1.5e-2692.75Show/hide
Query:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        EDCSERKHIGK +EPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

XP_038875985.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X1 [Benincasa hispida]1.5e-2663.06Show/hide
Query:  PTGSETRPMPTPIKPNGPKGTKMKGMKSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIG
        P  S    +P+ ++P  P              S+ +P    ++DCSERKHIGK+TEPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEA+TRGEFGIG
Subjt:  PTGSETRPMPTPIKPNGPKGTKMKGMKSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIG

Query:  SAAQFGSADLR
        SAAQFGSADLR
Subjt:  SAAQFGSADLR

XP_038875987.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X2 [Benincasa hispida]1.5e-2663.06Show/hide
Query:  PTGSETRPMPTPIKPNGPKGTKMKGMKSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIG
        P  S    +P+ ++P  P              S+ +P    ++DCSERKHIGK+TEPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEA+TRGEFGIG
Subjt:  PTGSETRPMPTPIKPNGPKGTKMKGMKSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIG

Query:  SAAQFGSADLR
        SAAQFGSADLR
Subjt:  SAAQFGSADLR

TrEMBL top hitse value%identityAlignment
A0A0A0KP67 Uncharacterized protein1.2e-2677.65Show/hide
Query:  KSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        K     S+ +P    ++DCSERKHIGK TEPKRW+KLVSTALAAAAVI F+SGMPSVAELNKYEADTRGEFGIGSAAQ+GSADLR
Subjt:  KSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

A0A6J1DTJ6 thylakoid lumenal protein TL20.3, chloroplastic isoform X14.6e-2679.75Show/hide
Query:  SKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        S+ +P  + ++DC E+KHIGK +EPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  SKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

A0A6J1E3I0 thylakoid lumenal protein TL20.3, chloroplastic isoform X33.6e-2691.3Show/hide
Query:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        EDCSERKHIGK +EPKRW+K VSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

A0A6J1HZ06 thylakoid lumenal protein TL20.3, chloroplastic isoform X37.2e-2792.75Show/hide
Query:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        EDCSERKHIGK +EPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  EDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

A0A6J1I279 thylakoid lumenal protein TL20.3, chloroplastic isoform X12.7e-2692.65Show/hide
Query:  DCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR
        DCSERKHIGK +EPKRW+KLVSTALAAAAVISF+SGMPS+AELNKYEADTRGEFGIGSAAQFGSADLR
Subjt:  DCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLR

SwissProt top hitse value%identityAlignment
Q8H1Q1 Thylakoid lumenal protein TL20.3, chloroplastic3.9e-1454.79Show/hide
Query:  SLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL
        +L I +  + R+    + E   WK+++S A+ AAAVI+ +SG+P++AELN++EADTRGEFGIGSAAQ+GSADL
Subjt:  SLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL

Arabidopsis top hitse value%identityAlignment
AT1G12250.1 Pentapeptide repeat-containing protein2.8e-1554.79Show/hide
Query:  SLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL
        +L I +  + R+    + E   WK+++S A+ AAAVI+ +SG+P++AELN++EADTRGEFGIGSAAQ+GSADL
Subjt:  SLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL

AT1G12250.2 Pentapeptide repeat-containing protein8.4e-1278.05Show/hide
Query:  AAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL
        AAAVI+ +SG+P++AELN++EADTRGEFGIGSAAQ+GSADL
Subjt:  AAAVISFTSGMPSVAELNKYEADTRGEFGIGSAAQFGSADL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGTCTCTGGGACTCTGGCTGATGAAAAAGCTTCCAGAGGATACTGGTGTCCGGCCCACTGGGTCTGAAACAAGGCCTATGCCAACCCCAATAAAGCCCAATGG
CCCCAAAGGAACAAAAATGAAGGGAATGAAGTCGAAGGACTTCGCAAGCAAAAACAGCCCATCTTTATCTATATCGGAAGATTGTTCGGAGAGGAAGCACATTGGTAAGA
CTACAGAGCCCAAGAGATGGAAAAAGTTGGTTTCAACTGCTTTGGCTGCTGCTGCAGTCATTAGTTTTACCTCAGGCATGCCTTCAGTTGCTGAACTCAACAAGTATGAG
GCTGATACCCGTGGTGAATTCGGAATTGGATCTGCTGCTCAATTTGGTTCTGCAGATCTCAGGTCTTTAGGCTTTCAAGATACGATTCTGTTCTTTTATTGCCATAGTGG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGTCTCTGGGACTCTGGCTGATGAAAAAGCTTCCAGAGGATACTGGTGTCCGGCCCACTGGGTCTGAAACAAGGCCTATGCCAACCCCAATAAAGCCCAATGG
CCCCAAAGGAACAAAAATGAAGGGAATGAAGTCGAAGGACTTCGCAAGCAAAAACAGCCCATCTTTATCTATATCGGAAGATTGTTCGGAGAGGAAGCACATTGGTAAGA
CTACAGAGCCCAAGAGATGGAAAAAGTTGGTTTCAACTGCTTTGGCTGCTGCTGCAGTCATTAGTTTTACCTCAGGCATGCCTTCAGTTGCTGAACTCAACAAGTATGAG
GCTGATACCCGTGGTGAATTCGGAATTGGATCTGCTGCTCAATTTGGTTCTGCAGATCTCAGGTCTTTAGGCTTTCAAGATACGATTCTGTTCTTTTATTGCCATAGTGG
TTGA
Protein sequenceShow/hide protein sequence
MSVSLGLWLMKKLPEDTGVRPTGSETRPMPTPIKPNGPKGTKMKGMKSKDFASKNSPSLSISEDCSERKHIGKTTEPKRWKKLVSTALAAAAVISFTSGMPSVAELNKYE
ADTRGEFGIGSAAQFGSADLRSLGFQDTILFFYCHSG