; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009284 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009284
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:4417589..4418161
RNA-Seq ExpressionHG10009284
SyntenyHG10009284
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1231.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.1e-1332.64Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        SWN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1231.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1231.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1231.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

TrEMBL top hitse value%identityAlignment
A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein7.6e-1331.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein7.6e-1331.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein3.4e-1332.64Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        SWN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein7.6e-1331.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein7.6e-1331.94Show/hide
Query:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT
        S + W   +G +  FW   W+ + PL +Q+PR +A++   + TV E W + + +WN   RRPL  REQ+ W+ +  S      N GM        +WN +
Subjt:  SNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLT

Query:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF
         + ++TV   K I     S    T    E+  LW + +P+KCKF
Subjt:  ANNQFTVKYLKKI----QSTASITAPNMEVGCLWNTFLPKKCKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCAGATTATTTTGTCGAATATGAAGTGGACAGTTCGAAATGGTTTAAATACGCTCTTCTGGAAGCACATATGGAATGAAAGTGAACCCTTATATATTCAATTGCC
ACGATTTCACGCTATTGCTGAAAACGGGAACATCACTGTATCCGAAGCTTGGAAGGAGAATGCGGCTGAATGGAACCCTGCCTTTAGAAGGCCTCTACTGGCAAGAGAGC
AAGAGTTATGGAATCATATGTCGAGATCCTGGACTACTCCATCGCTGAATTCTGGTATGGACTTAATATCATGGAATTTGATATCATGGAATTTGACTGCTAATAACCAA
TTTACTGTCAAATATCTTAAGAAGATCCAATCTACAGCATCCATTACCGCCCCCAATATGGAGGTAGGCTGCTTATGGAACACTTTTTTGCCTAAAAAATGCAAGTTTTT
ATATGGTATATGTTGCATAAAGGACTCAACACTATTGATAAGTGCCAAGCTCGATATCCTGCTTTGCATCTCCATCCAAATTGGTGTGTTCTTTGTAAATCTCACGGGGA
GGATGGTGAGCACTTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCAGATTATTTTGTCGAATATGAAGTGGACAGTTCGAAATGGTTTAAATACGCTCTTCTGGAAGCACATATGGAATGAAAGTGAACCCTTATATATTCAATTGCC
ACGATTTCACGCTATTGCTGAAAACGGGAACATCACTGTATCCGAAGCTTGGAAGGAGAATGCGGCTGAATGGAACCCTGCCTTTAGAAGGCCTCTACTGGCAAGAGAGC
AAGAGTTATGGAATCATATGTCGAGATCCTGGACTACTCCATCGCTGAATTCTGGTATGGACTTAATATCATGGAATTTGATATCATGGAATTTGACTGCTAATAACCAA
TTTACTGTCAAATATCTTAAGAAGATCCAATCTACAGCATCCATTACCGCCCCCAATATGGAGGTAGGCTGCTTATGGAACACTTTTTTGCCTAAAAAATGCAAGTTTTT
ATATGGTATATGTTGCATAAAGGACTCAACACTATTGATAAGTGCCAAGCTCGATATCCTGCTTTGCATCTCCATCCAAATTGGTGTGTTCTTTGTAAATCTCACGGGGA
GGATGGTGAGCACTTGTTCTTAA
Protein sequenceShow/hide protein sequence
MGQIILSNMKWTVRNGLNTLFWKHIWNESEPLYIQLPRFHAIAENGNITVSEAWKENAAEWNPAFRRPLLAREQELWNHMSRSWTTPSLNSGMDLISWNLISWNLTANNQ
FTVKYLKKIQSTASITAPNMEVGCLWNTFLPKKCKFLYGICCIKDSTLLISAKLDILLCISIQIGVFFVNLTGRMVSTCS