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HG10009317 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009317
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpaired amphipathic helix protein Sin3-like 4
Genome locationChr06:4729514..4729807
RNA-Seq ExpressionHG10009317
SyntenyHG10009317
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600146.1 Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma subsp. sororia]5.7e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

KAG7030812.1 Paired amphipathic helix protein Sin3-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

XP_022943142.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]5.7e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

XP_022943143.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]5.7e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

XP_022993016.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucurbita maxima]5.7e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

TrEMBL top hitse value%identityAlignment
A0A6J1FQW7 paired amphipathic helix protein Sin3-like 4 isoform X12.8e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

A0A6J1FS73 paired amphipathic helix protein Sin3-like 4 isoform X22.8e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

A0A6J1JRM1 paired amphipathic helix protein Sin3-like 4 isoform X22.8e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

A0A6J1JV79 paired amphipathic helix protein Sin3-like 4 isoform X32.8e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

A0A6J1JXD3 paired amphipathic helix protein Sin3-like 4 isoform X12.8e-1959.79Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK
        MA  GS+Q  TT D   YLKRV++ F + REKYE FL   +DFKAQRI TA + G V DLF+ H DLI+GFN FLPK  EI L P EDDQ  PPQ K
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 42.3e-1546.32Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQ
        M    S+Q  TT D   YLK V++ F + R+KY+ FL   +DFKAQR+ T  +   V +LF+ + +LI+GFN FLPK  EI L P EDDQ   P+
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQ

O48686 Paired amphipathic helix protein Sin3-like 34.7e-1647.83Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP
        M   GS+Q  TT D   YLK V++ F + R KY+ FL   ++FK+QR+ TA +   V +LF+ H +LI+GFN FLPK  EI L P ED Q P
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP

Q9LFQ3 Paired amphipathic helix protein Sin3-like 21.7e-1345.45Show/hide
Query:  SSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPP
        ++Q  TT D   YLK V+E F + R+KY+ FL   +DFKAQ+  T+ +   V +LF+ H +LI GFN FLPK  EI L    DD + P
Subjt:  SSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPP

Q9SRH9 Paired amphipathic helix protein Sin3-like 14.0e-1547.78Show/hide
Query:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED
        EEG     SQ  TT D   YL+ V+E F + REKY+ FL   +DFKAQR  T  +   V +LF+ H +LI GFN FLPK  EI L  ++D
Subjt:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED

Q9XIE1 Paired amphipathic helix protein Sin3-like 55.2e-1543.82Show/hide
Query:  GSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPP
        G++   TT D   YLK V++ F +++EKYE FL   +DFKAQR+ T  +   V DLF+ + DL++GFN FLPK  +I L P+++    P
Subjt:  GSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPP

Arabidopsis top hitse value%identityAlignment
AT1G24190.1 SIN3-like 33.4e-1747.83Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP
        M   GS+Q  TT D   YLK V++ F + R KY+ FL   ++FK+QR+ TA +   V +LF+ H +LI+GFN FLPK  EI L P ED Q P
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP

AT1G24190.2 SIN3-like 33.4e-1747.83Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP
        M   GS+Q  TT D   YLK V++ F + R KY+ FL   ++FK+QR+ TA +   V +LF+ H +LI+GFN FLPK  EI L P ED Q P
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDP

AT1G70060.1 SIN3-like 41.7e-1646.32Show/hide
Query:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQ
        M    S+Q  TT D   YLK V++ F + R+KY+ FL   +DFKAQR+ T  +   V +LF+ + +LI+GFN FLPK  EI L P EDDQ   P+
Subjt:  MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQ

AT3G01320.1 SIN3-like 12.8e-1647.78Show/hide
Query:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED
        EEG     SQ  TT D   YL+ V+E F + REKY+ FL   +DFKAQR  T  +   V +LF+ H +LI GFN FLPK  EI L  ++D
Subjt:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED

AT3G01320.2 SIN3-like 12.8e-1647.78Show/hide
Query:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED
        EEG     SQ  TT D   YL+ V+E F + REKY+ FL   +DFKAQR  T  +   V +LF+ H +LI GFN FLPK  EI L  ++D
Subjt:  EEGS----SQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAAGGAAGTTCCCAGAATTCAACCACTAAGGATTTCGAACCATATCTCAAGAGAGTGAGGGAAACATTTCCAAACGATAGAGAAAAGTATGAACATTTCCT
TCGAGCATTCCAAGATTTCAAGGCCCAAAGAATTGGTACTGCCGAAATCTTTGGAACAGTAATGGACTTGTTTCAAGACCACCCAGATCTTATTATGGGCTTCAATATTT
TCTTGCCCAAAAACTGTGAGATCATTCTTGCACCCCAGGAGGATGATCAAGATCCACCTCCACAAAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAAGGAAGTTCCCAGAATTCAACCACTAAGGATTTCGAACCATATCTCAAGAGAGTGAGGGAAACATTTCCAAACGATAGAGAAAAGTATGAACATTTCCT
TCGAGCATTCCAAGATTTCAAGGCCCAAAGAATTGGTACTGCCGAAATCTTTGGAACAGTAATGGACTTGTTTCAAGACCACCCAGATCTTATTATGGGCTTCAATATTT
TCTTGCCCAAAAACTGTGAGATCATTCTTGCACCCCAGGAGGATGATCAAGATCCACCTCCACAAAACAAATAA
Protein sequenceShow/hide protein sequence
MAEEGSSQNSTTKDFEPYLKRVRETFPNDREKYEHFLRAFQDFKAQRIGTAEIFGTVMDLFQDHPDLIMGFNIFLPKNCEIILAPQEDDQDPPPQNK