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HG10009319 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009319
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPaired amphipathic helix protein Sin3-like 4
Genome locationChr06:4735813..4736088
RNA-Seq ExpressionHG10009319
SyntenyHG10009319
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151191.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]4.3e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

XP_022151192.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]4.3e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

XP_022151193.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]4.3e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

XP_022943142.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]1.2e-1554.17Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

XP_022943143.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]1.2e-1554.17Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

TrEMBL top hitse value%identityAlignment
A0A6J1DBI6 paired amphipathic helix protein Sin3-like 4 isoform X32.1e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

A0A6J1DCT7 paired amphipathic helix protein Sin3-like 4 isoform X22.1e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

A0A6J1DDV1 paired amphipathic helix protein Sin3-like 4 isoform X12.1e-1655.21Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

A0A6J1FQW7 paired amphipathic helix protein Sin3-like 4 isoform X16.0e-1654.17Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

A0A6J1JXD3 paired amphipathic helix protein Sin3-like 4 isoform X16.0e-1654.17Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK
        MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DLF+ H DLILGF TFLP       PLEDDQ  PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 42.7e-1342.71Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN------EPLEDDQDPPPHK
        M    S+Q+LT   +++Y+  VK++FQ+ R+KY+ F+ V+KDFKAQR++ T +   + +LF+ + +LILGF TFLP        P EDDQ   P K
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN------EPLEDDQDPPPHK

O48686 Paired amphipathic helix protein Sin3-like 32.7e-1340.43Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE---PLEDDQDPPPHKK
        M   GS+Q+LT   +++Y+  VK++FQ+ R KY+ F+ V+K+FK+QR++   +   + +LF+ H +LILGF TFLP      L+ +   PP KK
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE---PLEDDQDPPPHKK

Q9LFQ3 Paired amphipathic helix protein Sin3-like 26.6e-1241.38Show/hide
Query:  SSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN--EPLEDDQDPPPHK
        ++Q+LT   +++Y+  VKE FQ+ R+KY+ F+ V+KDFKAQ+ + + + + + +LF+ H +LI GF TFLP   E   DD + P  K
Subjt:  SSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN--EPLEDDQDPPPHK

Q9SRH9 Paired amphipathic helix protein Sin3-like 11.7e-1245.98Show/hide
Query:  SQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE---PLEDDQDPPPHK
        SQ+LT   ++SY+  VKE FQ+ REKY+ F+ V+KDFKAQR +   + A + +LF+ H +LI GF TFLP      L ++ D  P K
Subjt:  SQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNE---PLEDDQDPPPHK

Q9XIE1 Paired amphipathic helix protein Sin3-like 52.4e-1448.61Show/hide
Query:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP
        G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ + DL+LGF TFLP
Subjt:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP

Arabidopsis top hitse value%identityAlignment
AT1G59890.1 SIN3-like 51.7e-1548.61Show/hide
Query:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP
        G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ + DL+LGF TFLP
Subjt:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP

AT1G59890.2 SIN3-like 51.7e-1548.61Show/hide
Query:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP
        G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ + DL+LGF TFLP
Subjt:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP

AT1G59890.3 SIN3-like 51.7e-1548.61Show/hide
Query:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP
        G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ + DL+LGF TFLP
Subjt:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP

AT1G59890.4 SIN3-like 51.7e-1548.61Show/hide
Query:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP
        G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ + DL+LGF TFLP
Subjt:  GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLP

AT1G70060.1 SIN3-like 41.9e-1442.71Show/hide
Query:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN------EPLEDDQDPPPHK
        M    S+Q+LT   +++Y+  VK++FQ+ R+KY+ F+ V+KDFKAQR++ T +   + +LF+ + +LILGF TFLP        P EDDQ   P K
Subjt:  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPN------EPLEDDQDPPPHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAGAAGGAAGTTCCCAGGAGTTAACCATTATTCATTCCATATCATATATCATGAGAGTGAAGGAAAGATTTCAAGAAAACAGAGAAAAGTATGAAGCTTTCAT
GCGAGTAATCAAAGATTTCAAGGCCCAAAGAATTAATCCTACGGAACTCTTTGCAACAATAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTTGCCACTT
TCTTGCCCAATGAACCCCTGGAGGATGATCAAGATCCACCTCCACACAAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAGAAGGAAGTTCCCAGGAGTTAACCATTATTCATTCCATATCATATATCATGAGAGTGAAGGAAAGATTTCAAGAAAACAGAGAAAAGTATGAAGCTTTCAT
GCGAGTAATCAAAGATTTCAAGGCCCAAAGAATTAATCCTACGGAACTCTTTGCAACAATAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTTGCCACTT
TCTTGCCCAATGAACCCCTGGAGGATGATCAAGATCCACCTCCACACAAAAAATAA
Protein sequenceShow/hide protein sequence
MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNEPLEDDQDPPPHKK