CuGenDBv2

Gene ID	HG10009371
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	origin of replication complex subunit 3
Genome location	Chr06:5187704..5193394
RNA-Seq Expression	HG10009371
Synteny	HG10009371
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009744 - response to sucrose (biological process) GO:0048527 - lateral root development (biological process) GO:0005656 - nuclear pre-replicative complex (cellular component) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0031261 - DNA replication preinitiation complex (cellular component) GO:0003688 - DNA replication origin binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type IPR020795 - Origin recognition complex, subunit 3 IPR040855 - ORC3, winged helix C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035560.1 Origin of replication complex subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.3e-63

89.31

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRP+E +PFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCC++N+NSLLPCAHDSTIMY+LAQEHGDLINLHDWFQSFKTVVSHP  KGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLL
        TKQ STPKK+KDKP +E+KSDASIQYPFTLL
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLL

XP_004143732.1 origin of replication complex subunit 3 [Cucumis sativus]

1.9e-63

87.59

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCS+N NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFK V+SHPQAKGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKP+VE KS+ASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

XP_008467329.1 PREDICTED: origin of replication complex subunit 3 [Cucumis melo]

1.7e-64

89.78

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCS+N NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKP+VESKSDASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

XP_038906702.1 origin of replication complex subunit 3 isoform X1 [Benincasa hispida]

3.0e-61

86.13

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPV+CIPFHELICFKDVRKLQLALIGDPRRRIQ+DLLEF KIIKCT CS+N+NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTV SHPQAK NHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDK SVESKSDASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

XP_038906703.1 origin of replication complex subunit 3 isoform X2 [Benincasa hispida]

3.0e-61

86.13

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPV+CIPFHELICFKDVRKLQLALIGDPRRRIQ+DLLEF KIIKCT CS+N+NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTV SHPQAK NHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDK SVESKSDASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRI1 SWIM-type domain-containing protein

9.1e-64

87.59

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCS+N NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFK V+SHPQAKGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKP+VE KS+ASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

A0A1S3CUK3 origin of replication complex subunit 3

8.2e-65

89.78

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCS+N NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKP+VESKSDASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

A0A5A7UIL2 Origin of replication complex subunit 3

8.2e-65

89.78

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCS+N NSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKP+VESKSDASIQ  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

A0A6J1DYU6 origin of replication complex subunit 3 isoform X2

1.9e-61

83.21

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRP+ECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQK+IKCTCCS+N+N LLPC HDSTIMY+LAQEHGDLINLHDWFQSFKTVVSH  AK NHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKPS+E+KSDAS+Q  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

A0A6J1DYW4 origin of replication complex subunit 3 isoform X1

1.9e-61

83.21

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        MRP+ECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQK+IKCTCCS+N+N LLPC HDSTIMY+LAQEHGDLINLHDWFQSFKTVVSH  AK NHR
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
        TKQCSTPKKRKDKPS+E+KSDAS+Q  F    +E+ +
Subjt:  TKQCSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

SwissProt top hits

e value

%identity

Alignment

Q0IY07 Origin of replication complex subunit 3

4.1e-29

47.01

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Query:  VECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQ
        VEC+PFHE++CFK+V  LQ ALIG+PRR +Q+DL++  K +KC+CC KN  ++L   HD++IM +LAQE+GD+INLHDW+ SF  +++   +K   + K 
Subjt:  VECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQ

Query:  CSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV
         ++P K+K KP V ++S+A IQ  F    +E+ +
Subjt:  CSTPKKRKDKPSVESKSDASIQYPFTLLCSEIVV

Q6E7H0 Origin of replication complex subunit 3

3.3e-34

50.72

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        M+PVE +PFHE++CFK+V KLQ AL+GDPR RIQ+DLLE   I+ C CCS+   +LLP  HD++I+Y LAQEH D+INLHDW+QSFKT++    +K   +
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKD-KPSVESKSDASIQYPFTLLCSEIVV
        +K  S  KKRK+     E+ ++A IQ  F     E+ +
Subjt:  TKQCSTPKKRKD-KPSVESKSDASIQYPFTLLCSEIVV

Arabidopsis top hits

e value

%identity

Alignment

AT5G16690.1 origin recognition complex subunit 3

2.3e-35

50.72

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Query:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR
        M+PVE +PFHE++CFK+V KLQ AL+GDPR RIQ+DLLE   I+ C CCS+   +LLP  HD++I+Y LAQEH D+INLHDW+QSFKT++    +K   +
Subjt:  MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHR

Query:  TKQCSTPKKRKD-KPSVESKSDASIQYPFTLLCSEIVV
        +K  S  KKRK+     E+ ++A IQ  F     E+ +
Subjt:  TKQCSTPKKRKD-KPSVESKSDASIQYPFTLLCSEIVV

Sequences

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CDS sequence

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ATGAGGCCTGTTGAATGCATACCTTTCCATGAACTTATCTGCTTCAAAGATGTTAGAAAACTTCAACTGGCTTTGATTGGAGATCCAAGAAGAAGGATTCAAGTGGATCT
TCTGGAGTTCCAGAAAATCATAAAATGTACTTGTTGCAGCAAGAACAAAAATAGTCTTTTGCCATGTGCACACGATTCCACAATTATGTATAGTTTAGCGCAAGAGCATG
GTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTCGTTAGTCATCCTCAAGCTAAAGGGAATCACAGGACGAAGCAATGTTCTACACCAAAGAAAAGG
AAAGATAAACCTAGCGTTGAAAGCAAAAGTGATGCATCAATTCAGTATCCTTTTACATTATTGTGTAGTGAAATTGTAGTCTATGCTAATTAG

mRNA sequence

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Protein sequence

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MRPVECIPFHELICFKDVRKLQLALIGDPRRRIQVDLLEFQKIIKCTCCSKNKNSLLPCAHDSTIMYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKR
KDKPSVESKSDASIQYPFTLLCSEIVVYAN

HG10009371 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome