CuGenDBv2

Gene ID	HG10009373
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U6 snRNA phosphodiesterase
Genome location	Chr06:5209126..5209490
RNA-Seq Expression	HG10009373
Synteny	HG10009373
Gene Ontology terms	GO:0034477 - U6 snRNA 3'-end processing (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:1990838 - poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends (molecular function)
InterPro domains	IPR027521 - U6 snRNA phosphodiesterase Usb1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055091.1 U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]

3.6e-31

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSPS  SASTS PQ  DETVS LPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

XP_004143673.1 U6 snRNA phosphodiesterase [Cucumis sativus]

1.2e-31

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSP   SASTSAPQ  DETV+FLPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

XP_008467330.1 PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]

3.6e-31

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSPS  SASTS PQ  DETVS LPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]

3.0e-33

88.89

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEEAD VSPSSAS S S PQLSDETVSFLPLPPP  SLLHFPNST ++LD+LPIDQATRVRSFPHVQGNYALHLYIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

XP_038875355.1 U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]

3.0e-33

88.89

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEEAD VSPSSAS S S PQLSDETVSFLPLPPP  SLLHFPNST ++LD+LPIDQATRVRSFPHVQGNYALHLYIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPH5 U6 snRNA phosphodiesterase

6.0e-32

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSP   SASTSAPQ  DETV+FLPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

A0A1S3CTB0 U6 snRNA phosphodiesterase

1.8e-31

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSPS  SASTS PQ  DETVS LPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

A0A5A7UND6 U6 snRNA phosphodiesterase

1.8e-31

86.67

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        MDALRASYGGSSSDEE D VSPS  SASTS PQ  DETVS LPLPPPPLSLL+FPNSTC VLD+LPIDQATRVRSFPHVQGNYALH+YIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

A0A6J1EQH7 U6 snRNA phosphodiesterase

3.3e-30

83.33

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        M+AL ASYGGSSSDE+ D VSPSSASAS S PQLSDET SFLPLPPPPLSLL FPNST + LD+LPI QA RVRSFPHVQGNYALHLYIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

A0A6J1HYN3 U6 snRNA phosphodiesterase

6.3e-29

79.17

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSA------PQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        M+AL ASYGGSSSDE+AD VSPSSASAS SA      PQLSDET SFLPLPPPPLSLL FPNST + LD+LPI QA RVRSFPHVQGNYA+HLYIP
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSA------PQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

SwissProt top hits

e value

%identity

Alignment

Q91W78 U6 snRNA phosphodiesterase

8.8e-04

34.48

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Query:  YGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQAT----RVRSFPHVQGNYALHLYIP
        Y  S S++EA+AV+   +   T   +     V    LP P   L  FP++     +E P D +     R+R+FPH +GN+A H+YIP
Subjt:  YGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQAT----RVRSFPHVQGNYALHLYIP

Arabidopsis top hits

e value

%identity

Alignment

AT5G51170.1 unknown protein

1.6e-13

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        M+ALRASYG SSSD + D +SP+S   + S  + S      + LPPPPL+LL    ST + LD    +   RVR+FPHV GNYALH+Y+P
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

AT5G51170.2 unknown protein

1.6e-13

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Query:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP
        M+ALRASYG SSSD + D +SP+S   + S  + S      + LPPPPL+LL    ST + LD    +   RVR+FPHV GNYALH+Y+P
Subjt:  MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIP

Sequences

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CDS sequence

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ATGGATGCTCTGAGGGCTTCGTATGGAGGAAGCTCGTCAGATGAAGAAGCGGATGCAGTCTCCCCTTCATCAGCATCAGCTTCAACATCAGCACCACAACTCTCCGATGA
GACTGTGAGCTTTTTACCTCTGCCTCCACCGCCTCTATCACTTCTCCATTTTCCAAATTCCACCTGTACTGTTTTGGATGAGTTGCCAATCGATCAGGCGACTAGGGTTC
GAAGCTTTCCTCACGTTCAAGGAAACTATGCCCTACACCTCTATATCCCAGGTATGTGA

mRNA sequence

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Protein sequence

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MDALRASYGGSSSDEEADAVSPSSASASTSAPQLSDETVSFLPLPPPPLSLLHFPNSTCTVLDELPIDQATRVRSFPHVQGNYALHLYIPGM

HG10009373 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome