CuGenDBv2

Gene ID	HG10009374
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U6 snRNA phosphodiesterase
Genome location	Chr06:5210377..5210823
RNA-Seq Expression	HG10009374
Synteny	HG10009374
Gene Ontology terms	GO:0034477 - U6 snRNA 3'-end processing (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:1990838 - poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends (molecular function)
InterPro domains	IPR027521 - U6 snRNA phosphodiesterase Usb1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055091.1 U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]

5.2e-51

89.17

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVRHV
        SRTFLSMEIITGGLMEVRH+
Subjt:  SRTFLSMEIITGGLMEVRHV

KAG6579639.1 U6 snRNA phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-49

87.29

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVY+PTNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEII GGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

XP_008467330.1 PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]

1.3e-49

88.98

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEIITGGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]

5.8e-50

88.98

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTN RKEVALFLKK+SSLVPALHLVD+DVPLD LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEIITGGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

XP_038875355.1 U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]

5.8e-50

88.98

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTN RKEVALFLKK+SSLVPALHLVD+DVPLD LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEIITGGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPH5 U6 snRNA phosphodiesterase

2.6e-48

87.29

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+ KLEQA AREFHISLSRTVPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEIITGGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

A0A1S3CTB0 U6 snRNA phosphodiesterase

6.2e-50

88.98

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEIITGGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

A0A5A7UND6 U6 snRNA phosphodiesterase

2.5e-51

89.17

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVRHV
        SRTFLSMEIITGGLMEVRH+
Subjt:  SRTFLSMEIITGGLMEVRHV

A0A6J1EQH7 U6 snRNA phosphodiesterase

1.2e-48

86.44

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVY+ TNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEII GGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

A0A6J1HYN3 U6 snRNA phosphodiesterase

2.6e-48

86.44

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PVY+PTNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDL
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEVR
        SRTFLSMEII GGLME+R
Subjt:  SRTFLSMEIITGGLMEVR

SwissProt top hits

e value

%identity

Alignment

Q54W16 U6 snRNA phosphodiesterase

5.9e-05

28.97

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Query:  VPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQR-------RKWETFVNDDLSR
        VPT +R ++   ++++  +                  +E  ++Q     FHIS+SRT PIR H I++    L++ L++QR       ++   F+ND+ SR
Subjt:  VPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQR-------RKWETFVNDDLSR

Query:  TFLSMEI
         FLS+ I
Subjt:  TFLSMEI

Q6DEF6 U6 snRNA phosphodiesterase

1.7e-04

36.11

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Query:  DEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLR------QKLQSQRRKWETFVNDDLSRTFLSMEIITG
        + H +   ++ EFH+SLS+TV +R H I   V  +R      QK      K + + N + +RTFL ME+ TG
Subjt:  DEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLR------QKLQSQRRKWETFVNDDLSRTFLSMEIITG

Arabidopsis top hits

e value

%identity

Alignment

AT5G51170.1 unknown protein

1.1e-35

60.68

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PV +P   +KE+  FLKK++S+VP LHLV+ DVPL  LCKD+ K E+AL REFHISL R VP+RVHQI+S+++MLRQKLQ Q+R      KWE FVNDD 
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEV
        +R+FLS+EI T GL E+
Subjt:  SRTFLSMEIITGGLMEV

AT5G51170.2 unknown protein

8.6e-36

61.54

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Query:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL
        PV +P   +KE+  FLKK++S+VP LHLV+ DVPL  LCKD+ K E+AL REFHISL R VP+RVHQI+S+++MLRQKLQ Q+R      KWE FVNDD 
Subjt:  PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDL

Query:  SRTFLSMEIITGGLMEV
        +R+FLS+EI T GL EV
Subjt:  SRTFLSMEIITGGLMEV

Sequences

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CDS sequence

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ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTT
CCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATT
GACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATT
ATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA

mRNA sequence

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Protein sequence

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MFPVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRKWETFVNDDLSRTFLSMEI
ITGGLMEVRHV

HG10009374 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome