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HG10009419 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009419
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationChr06:5705639..5708709
RNA-Seq ExpressionHG10009419
SyntenyHG10009419
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143713.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]4.2e-3981.48Show/hide
Query:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN
        MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVDSVL+ ELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_008467263.1 PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]1.3e-3783.33Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_022159571.1 CDGSH iron-sulfur domain-containing protein NEET [Momordica charantia]7.4e-3672.57Show/hide
Query:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKA
        MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+EDKVVDSVL+++L+KPLT YCRCWRS TFPLC+GSHVKHNKA
Subjt:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKA

Query:  TGDNVGPLLLKKQ
        TGDNVGPLLLKKQ
Subjt:  TGDNVGPLLLKKQ

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]3.7e-3575Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV
        MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDSV++A+L+KPLTPYCRCWRS TFPLC+GSHVKHNKATGDNV
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

XP_038876467.1 CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]2.8e-4386.79Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVG
        MASIVAIS PSSLSI S PPH +F G GRR  VVVRA+G GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRS TFPLC+GSHVKHNKATGDNVG
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVG

Query:  PLLLKK
        PLLLK+
Subjt:  PLLLKK

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein2.0e-3981.48Show/hide
Query:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN
        MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVDSVL+ ELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A1S3CTC1 CDGSH iron-sulfur domain-containing protein NEET6.5e-3883.33Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A5A7UKN7 CDGSH iron-sulfur domain-containing protein NEET6.5e-3883.33Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A6J1E4B9 CDGSH iron-sulfur domain-containing protein NEET3.6e-3672.57Show/hide
Query:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKA
        MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+EDKVVDSVL+++L+KPLT YCRCWRS TFPLC+GSHVKHNKA
Subjt:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKA

Query:  TGDNVGPLLLKKQ
        TGDNVGPLLLKKQ
Subjt:  TGDNVGPLLLKKQ

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET1.8e-3575Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV
        MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDSV++A+L+KPLTPYCRCWRS TFPLC+GSHVKHNKATGDNV
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

SwissProt top hitse value%identityAlignment
C1BI29 CDGSH iron-sulfur domain-containing protein 2A6.7e-1657.14Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L++    YCRCWRS TFP+C+ SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B6.7e-1658.73Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L      YCRCWRS TFP+C+GSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A6.7e-1658.73Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L      YCRCWRS TFP+C+GSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ

Q7T326 CDGSH iron-sulfur domain-containing protein 23.0e-1658.73Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L  P   YCRCWRS TFP+C+ SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET2.7e-3368.52Show/hide
Query:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV
        +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDSV++ ELSK +TPYCRCWRSGTFPLC+GSHVKHNKA GDNV
Subjt:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding1.9e-3468.52Show/hide
Query:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV
        +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDSV++ ELSK +TPYCRCWRSGTFPLC+GSHVKHNKA GDNV
Subjt:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGC
TGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGAT
GTTGGAGGTCAGGCACATTTCCTCTGTGTAATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGC
TGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGAT
GTTGGAGGTCAGGCACATTTCCTCTGTGTAATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG
Protein sequenceShow/hide protein sequence
MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ