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HG10009426 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009426
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA helicase
Genome locationChr06:5753299..5753562
RNA-Seq ExpressionHG10009426
SyntenyHG10009426
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017116.1 DEAD-box ATP-dependent RNA helicase 7 [Cucurbita argyrosperma subsp. argyrosperma]5.1e-2790.7Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEAL SEDAFEQ +D+L LSDKKKKKSK DKESKKRKA E ADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

XP_008467258.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 7 [Cucumis melo]2.7e-2891.95Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV
        MDKKEKKMKNKALVEALAS D FEQN D LDLSDKKKKKSKSDKESKKRKA EVADDGDRSETSSELGEPVNSR K+GKEKKSSKKV
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV

XP_022970184.1 DEAD-box ATP-dependent RNA helicase 7-like [Cucurbita maxima]5.1e-2790.7Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEAL SEDAFEQ +D+L LSDKKKKKSK DKESKKRKA E ADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

XP_023551208.1 DEAD-box ATP-dependent RNA helicase 7-like [Cucurbita pepo subsp. pepo]5.1e-2790.7Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEAL SEDAFEQ +D+L LSDKKKKKSK DKESKKRKA E ADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

XP_038876470.1 DEAD-box ATP-dependent RNA helicase 7 [Benincasa hispida]1.4e-2790.8Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV
        MDKKEKKMKNKALVEALA EDAFEQN D LDLSDKKKKKSKS+KESKKRKA EVADDGDRSETSSELGEPVNSRLK GK++KSSKKV
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV

TrEMBL top hitse value%identityAlignment
A0A0A0KL93 RNA helicase3.2e-2790.7Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEALAS DA E N D LDLSDKKKKKSKSDKESKKRKA EVADDGDRSETSSELGEPVNSR K+GKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

A0A1S3CTB6 RNA helicase1.3e-2891.95Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV
        MDKKEKKMKNKALVEALAS D FEQN D LDLSDKKKKKSKSDKESKKRKA EVADDGDRSETSSELGEPVNSR K+GKEKKSSKKV
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV

A0A6J1ESS9 RNA helicase1.2e-2689.53Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEAL  EDAFEQ +D+L LSDKKKKKSK DKESKKRKA E ADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

A0A6J1I4T2 RNA helicase2.5e-2790.7Show/hide
Query:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MDKKEKKMKNKALVEAL SEDAFEQ +D+L LSDKKKKKSK DKESKKRKA E ADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
Subjt:  MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

A0A6J1JZR9 RNA helicase8.3e-2387.34Show/hide
Query:  MKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK
        MKNKALVEAL +E+AFEQ +DDL LSDKKKKKSK DKESKKRKA EVADD DRSETSSELGEPVNSRLK+GKEKKSSKK
Subjt:  MKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAAGGAGAAGAAGATGAAGAACAAAGCTCTTGTGGAAGCCCTAGCTTCGGAGGACGCTTTTGAGCAGAACACGGACGATTTGGATCTTTCGGATAAGAAGAA
GAAGAAGAGTAAGTCTGATAAGGAAAGTAAGAAGCGGAAAGCTGCAGAAGTGGCTGACGACGGGGATAGGAGTGAGACGAGCTCGGAGTTGGGCGAGCCTGTGAATTCAA
GGTTGAAAAACGGGAAGGAAAAGAAGAGCTCGAAGAAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAAGGAGAAGAAGATGAAGAACAAAGCTCTTGTGGAAGCCCTAGCTTCGGAGGACGCTTTTGAGCAGAACACGGACGATTTGGATCTTTCGGATAAGAAGAA
GAAGAAGAGTAAGTCTGATAAGGAAAGTAAGAAGCGGAAAGCTGCAGAAGTGGCTGACGACGGGGATAGGAGTGAGACGAGCTCGGAGTTGGGCGAGCCTGTGAATTCAA
GGTTGAAAAACGGGAAGGAAAAGAAGAGCTCGAAGAAGGTTTAA
Protein sequenceShow/hide protein sequence
MDKKEKKMKNKALVEALASEDAFEQNTDDLDLSDKKKKKSKSDKESKKRKAAEVADDGDRSETSSELGEPVNSRLKNGKEKKSSKKV