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HG10009446 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009446
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationChr06:6055262..6056719
RNA-Seq ExpressionHG10009446
SyntenyHG10009446
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]7.7e-4881.1Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SDAVQPAAL SHGSLDL DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A  L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IE+LLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]2.2e-5592.13Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL SHGSLDL DDYG SEN LRQFDMN AYGPCLGMTRMARWERAC+L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]4.5e-5692.91Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL DDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC+L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]7.7e-4881.1Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SD VQPAAL SHGSLDL DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A  L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]4.4e-5995.28Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MASARGGLKDFYKQRK+SGISKANSKASKPSSRK KSPANSASLGSDAVQPAAL SHGSLDL DDYGA ENMLRQFDMNMAYGPCLGMTRMARWERACNL
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDIETLLKA KVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein1.1e-5592.13Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL SHGSLDL DDYG SEN LRQFDMN AYGPCLGMTRMARWERAC+L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 42.2e-5692.91Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL DDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC+L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 42.2e-5692.91Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL DDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC+L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591433.7e-4881.1Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SD VQPAAL SHGSLDL DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A  L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911829.2e-4779.53Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL
        MASARGG+KDFYKQRK+SG+    SK SKPSS KTKS A+SA+L SD VQPAAL SHGSLDL DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A  L
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 42.6e-0653.49Show/hide
Query:  ENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLL
        E +L  FD    YGP LGMTRM RW+RA N  LNPP+ +  +L
Subjt:  ENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 48.1e-0845.45Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +L++  G  + +C LW
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 41.8e-0753.49Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA
        +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LKA
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 43.6e-0844.44Show/hide
Query:  DDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        D+  A   +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LK   G  + +C LW
Subjt:  DDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 41.1e-3662.31Show/hide
Query:  MASARGGLKDFYKQRKSS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERA
        MA+    LK FYKQ KS+   GISK     SKPSSRK  +P ++A+ GSD  QPAAL SHGS+DL +DY   E MLRQFDMN+ YGPCLGMTR+ RWERA
Subjt:  MASARGGLKDFYKQRKSS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERA

Query:  CNLGLNPPKDIETLLKAGKVQLECLWDSRV
          LG+NPP +IE LLK GKVQ +CLW  RV
Subjt:  CNLGLNPPKDIETLLKAGKVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGCGCGTGGAGGATTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGTATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACTAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCTTTTCTCACGGATCCCTCGACCTTCTAGATGATTATGGCGCATCTGAGAATATGCTGA
GGCAATTTGATATGAACATGGCTTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAATCTTGGTCTGAACCCTCCAAAAGACATTGAGACA
CTCTTAAAAGCTGGAAAAGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAGCGCGTGGAGGATTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGTATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACTAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCTTTTCTCACGGATCCCTCGACCTTCTAGATGATTATGGCGCATCTGAGAATATGCTGA
GGCAATTTGATATGAACATGGCTTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAATCTTGGTCTGAACCCTCCAAAAGACATTGAGACA
CTCTTAAAAGCTGGAAAAGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAG
Protein sequenceShow/hide protein sequence
MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIET
LLKAGKVQLECLWDSRV