; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009493 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009493
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationChr06:6622487..6622942
RNA-Seq ExpressionHG10009493
SyntenyHG10009493
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]8.8e-6784.77Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRR ALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-6785.43Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_011655483.1 uncharacterized protein LOC105435544 [Cucumis sativus]6.7e-6786.93Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRRR+LPE K RDD K  SRSNTLKDLFVSSPPY GT+ D+H+TAV AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP

Query:  TRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        TRNVTPVC KEKE+G VGS  WNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  TRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]2.6e-6684.77Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD +  +I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_038875200.1 uncharacterized protein LOC120067717 [Benincasa hispida]1.8e-7291.39Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSP RRALPEKKRDDHK+ SRSNTLKDLFVSSPPY  T+GDIH+TAVAAPT
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        R+ T VCKEKEDGEVGSA WNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein3.3e-6786.93Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRRR+LPE K RDD K  SRSNTLKDLFVSSPPY GT+ D+H+TAV AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP

Query:  TRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        TRNVTPVC KEKE+G VGS  WNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  TRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A1S3CSY3 uncharacterized protein LOC1035045991.8e-6586.45Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRR RALPE KKRDDHK  SRSNTLKDLFVSSPPY GT+ D+H+TAV 
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        APT+N TPVC KEKE+G VGS  WNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  APTRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A5D3BMD8 Uncharacterized protein1.8e-6586.45Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRR RALPE KKRDDHK  SRSNTLKDLFVSSPPY GT+ D+H+TAV 
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        APT+N TPVC KEKE+G VGS  WNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  APTRNVTPVC-KEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633731.2e-6684.11Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFR+KYLLRKTWRP+LA IPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704935.8e-6482.78Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S     RRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown2.9e-1543.48Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGR-RSPR-RRALPEKKRDDHKDFSRSN-TLKDLFVSSPPYD---GTNGDIHKTA
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LL+RSS R R P  +  + E K+ D +   RS+  L DLFVSSPP++   G  G    T 
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGR-RSPR-RRALPEKKRDDHKDFSRSN-TLKDLFVSSPPYD---GTNGDIHKTA

Query:  VAAPTRNVTPVCKEKEDGEVGS-----AVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        +        PV     +   G       V   GS RP  +      LLR++WRPVL  IPE
Subjt:  VAAPTRNVTPVCKEKEDGEVGS-----AVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

AT1G68430.1 unknown protein8.3e-1542.33Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLLS +    SP RR         HKD +    LKDLFVSS            +A  
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVCKEKEDGEVGSAVWNPGSPR---------PGWTGFRYKYLLRKTWRPVLAGIPE
            +  P  K KE+     A     + R         P W GF  K LL++ WRP L  I E
Subjt:  APTRNVTPVCKEKEDGEVGSAVWNPGSPR---------PGWTGFRYKYLLRKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related6.2e-1038.01Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSS-GRRSPRRRALPE----------KKRDDHKDFSRSNTLKDLFVS--SPP
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  +SS  RR   R+ L E          KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSS-GRRSPRRRALPE----------KKRDDHKDFSRSNTLKDLFVS--SPP

Query:  YDGTNGDIHKTAVAAPTRNVTPV-CKEKEDGEVGSA--VWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        Y G   DI    +      ++P+      DG   +A    + GS +     FR + +LRK WRPVL  IPE
Subjt:  YDGTNGDIHKTAVAAPTRNVTPV-CKEKEDGEVGSA--VWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACCTTAAGCCCTAGAACCAGTCCTCTTGTTCACCTCCGCCGCCGGAAAAC
CACTCTACGGATGCTTCTCAGTCGGAGTTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGAAGCAACACGT
TGAAGGATTTGTTCGTTTCGTCGCCACCGTATGATGGAACTAACGGCGATATTCACAAGACAGCGGTCGCGGCTCCGACCCGGAACGTGACTCCGGTTTGTAAGGAGAAG
GAGGATGGTGAGGTTGGATCAGCCGTTTGGAATCCCGGTTCACCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTTCGGAAAACTTGGCGGCCGGTACTCGC
CGGAATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACCTTAAGCCCTAGAACCAGTCCTCTTGTTCACCTCCGCCGCCGGAAAAC
CACTCTACGGATGCTTCTCAGTCGGAGTTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGAAGCAACACGT
TGAAGGATTTGTTCGTTTCGTCGCCACCGTATGATGGAACTAACGGCGATATTCACAAGACAGCGGTCGCGGCTCCGACCCGGAACGTGACTCCGGTTTGTAAGGAGAAG
GAGGATGGTGAGGTTGGATCAGCCGTTTGGAATCCCGGTTCACCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTTCGGAAAACTTGGCGGCCGGTACTCGC
CGGAATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPTRNVTPVCKEK
EDGEVGSAVWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE