CuGenDBv2

Gene ID	HG10009547
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	HMG-Y-related protein A
Genome location	Chr06:7331530..7332171
RNA-Seq Expression	HG10009547
Synteny	HG10009547
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016584 - nucleosome positioning (biological process) GO:0030261 - chromosome condensation (biological process) GO:0045910 - negative regulation of DNA recombination (biological process) GO:0000785 - chromatin (cellular component) GO:0005730 - nucleolus (cellular component) GO:0003690 - double-stranded DNA binding (molecular function) GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domains	IPR000116 - High mobility group protein HMGA IPR017956 - AT hook, DNA-binding motif

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004150116.1 HMG-Y-related protein A [Cucumis sativus]

3.1e-34

54.3

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

XP_008466945.1 PREDICTED: HMG-Y-related protein A [Cucumis melo]

3.1e-34

54.3

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

XP_022953026.1 HMG-Y-related protein B-like [Cucurbita moschata]

5.4e-31

50.27

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MAT DQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

XP_022973541.1 HMG-Y-related protein A-like [Cucurbita maxima]

3.2e-31

51.08

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MAT+DQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

XP_038906720.1 HMG-Y-related protein A-like [Benincasa hispida]

4.7e-35

54.05

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTT GSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPG4 H15 domain-containing protein

1.5e-34

54.3

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

A0A1S3CSD8 HMG-Y-related protein A

1.5e-34

54.3

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

A0A5D3E3W3 HMG-Y-related protein A

1.5e-34

54.3

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MATDDQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

A0A6J1I8X7 HMG-Y-related protein A-like

1.5e-31

51.08

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MAT+DQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC
               P  TVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPVGC

A0A6J1JSA2 HMG-Y-related protein B-like

2.6e-31

50.27

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Query:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------
        MAT DQLNNPPQPPPPAPSLPHYPE                                                                           
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPE---------------------------------------------------------------------------

Query:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC
               P  TVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  -----SSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

SwissProt top hits

e value

%identity

Alignment

Q00423 HMG-Y-related protein A

4.9e-11

54.64

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Query:  NPPQPPPPAPSLPHYPESS-PHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPAVAPV
        +P  PP      P  P++  P  TVVSPPRPRGRP  PKDP AP   PK K T GSGRPRGRP K P+    +AP A    R RGRPPKVKP +  V
Subjt:  NPPQPPPPAPSLPHYPESS-PHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPAVAPV

Q10370 HMG-Y-related protein B (Fragment)

4.6e-09

50.98

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Query:  NPPQPP------PPAPSLPHYPESSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK-PAPTSAPVAGPPRGRGRPPKVKPAVA
        +P  PP      PP P +P      P  TVVSPPRPRGRP  PKDP AP   PK K T  +GRPRGRP K  + PA  S       R RGRPPKVKP + 
Subjt:  NPPQPP------PPAPSLPHYPESSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK-PAPTSAPVAGPPRGRGRPPKVKPAVA

Query:  PV
         V
Subjt:  PV

Q43386 HMG-Y-related protein A

1.5e-12

60.92

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Query:  STVVS--PPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPVGC
        +TVVS  PPR RGRPPKPKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKVKP  VAPVGC
Subjt:  STVVS--PPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPVGC

Arabidopsis top hits

e value

%identity

Alignment

AT1G14900.1 high mobility group A

1.1e-13

60.92

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Query:  STVVS--PPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPVGC
        +TVVS  PPR RGRPPKPKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKVKP  VAPVGC
Subjt:  STVVS--PPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPVGC

Sequences

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CDS sequence

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ATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGTCCTCTCCCCACAGCACCGTCGTCTCTCCGCCACG
CCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACC
CGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

mRNA sequence

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Protein sequence

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MATDDQLNNPPQPPPPAPSLPHYPESSPHSTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

HG10009547 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome