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HG10009555 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009555
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionmediator of RNA polymerase II transcription subunit 23
Genome locationChr06:7427201..7430058
RNA-Seq ExpressionHG10009555
SyntenyHG10009555
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0010628 - positive regulation of gene expression (biological process)
GO:0005667 - transcription factor complex (cellular component)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR021629 - Mediator complex, subunit Med23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008467111.1 PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X1 [Cucumis melo]3.4e-3788.89Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDD+SIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
XP_011655454.1 mediator of RNA polymerase II transcription subunit 23 [Cucumis sativus]1.5e-3790Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
XP_016898808.1 PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Cucumis melo]3.4e-3788.89Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDD+SIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
XP_022973546.1 mediator of RNA polymerase II transcription subunit 23 [Cucurbita maxima]5.7e-3787.78Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETVMNWL+S GVPELSSAQNLQTN+RIM+MREVSPLPMSLLSGFSMNLCSKL YQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
XP_038875594.1 mediator of RNA polymerase II transcription subunit 23 [Benincasa hispida]5.2e-3891.11Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETVMNWLTS GVPELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
TrEMBL top hitse value%identityAlignment
A0A0A0KPD2 Uncharacterized protein7.3e-3890Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
A0A1S3CSR7 mediator of RNA polymerase II transcription subunit 23 isoform X11.6e-3788.89Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDD+SIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
A0A1S4DS63 mediator of RNA polymerase II transcription subunit 23 isoform X21.6e-3788.89Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDD+SIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
A0A5A7TSF1 Mediator of RNA polymerase II transcription subunit 23 isoform X11.6e-3788.89Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDD+SIGMFWVVSYTMAQPACETVMNWLTS G PELSSAQNLQTN+RIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
A0A6J1I8Y2 mediator of RNA polymerase II transcription subunit 232.8e-3787.78Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETVMNWL+S GVPELSSAQNLQTN+RIM+MREVSPLPMSLLSGFSMNLCSKL YQMEE LFSGQ +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
SwissProt top hitse value%identityAlignment
F4I4P3 Mediator of RNA polymerase II transcription subunit 231.0e-2871.11Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETV+NWL+S G+ EL     LQ NDR+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE LF  Q +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
Arabidopsis top hitse value%identityAlignment
AT1G23230.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).7.2e-3071.11Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETV+NWL+S G+ EL     LQ NDR+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE LF  Q +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
AT1G23230.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629).7.2e-3071.11Show/hide
Query:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV
        MDDRSIGMFWVVSYTMAQPACETV+NWL+S G+ EL     LQ NDR+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE LF  Q +  +
Subjt:  MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAGATCAATTGGGATGTTTTGGGTTGTCTCATATACCATGGCACAACCAGCATGTGAAACTGTGATGAATTGGTTAACTTCTCCAGGAGTTCCAGAA
CTTTCCTCAGCACAAAATTTACAGACCAATGATAGGATAATGGTTATGCGAGAAGTGAGCCCATTACCGATGTCTTTGTTATCAGGTTTTTCAATGAACTTGTGC
TCGAAGCTGGCATATCAAATGGAAGAATTTTTATTTTCTGGACAGGGCATCAAGAGGGTCCTGGGTTTCGGTTCGGCTGAAGAAAAGGAAAAGGAAGGATGGATG
AAAGAGGAAGAAAAAGTAAAAGAGAGAGAGTATTTAAAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGACAGATCAATTGGGATGTTTTGGGTTGTCTCATATACCATGGCACAACCAGCATGTGAAACTGTGATGAATTGGTTAACTTCTCCAGGAGTTCCAGAA
CTTTCCTCAGCACAAAATTTACAGACCAATGATAGGATAATGGTTATGCGAGAAGTGAGCCCATTACCGATGTCTTTGTTATCAGGTTTTTCAATGAACTTGTGC
TCGAAGCTGGCATATCAAATGGAAGAATTTTTATTTTCTGGACAGGGCATCAAGAGGGTCCTGGGTTTCGGTTCGGCTGAAGAAAAGGAAAAGGAAGGATGGATG
AAAGAGGAAGAAAAAGTAAAAGAGAGAGAGTATTTAAAATTTTAA
Protein sequenceShow/hide protein sequence
MDDRSIGMFWVVSYTMAQPACETVMNWLTSPGVPELSSAQNLQTNDRIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEEFLFSGQGIKRVLGFGSAEEKEKEGWM
KEEEKVKEREYLKF