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HG10009636 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009636
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionribonuclease P protein subunit p38
Genome locationChr06:8382707..8385047
RNA-Seq ExpressionHG10009636
SyntenyHG10009636
Gene Ontology termsGO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579150.1 hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6790.13Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K AR LNAESLPEKIWLKKQFAIGVNEVTR+LERMTPS DSARI+NPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

XP_022938626.1 ribonuclease P protein subunit p38 [Cucurbita moschata]1.8e-6890.79Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K AR LNAESLPEKIWLKKQFAIGVNEVTR+LERMTPSGDSARI+NPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

XP_022993803.1 ribonuclease P protein subunit p38 [Cucurbita maxima]9.9e-6790.73Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K ARFLNA+SLPEKIWLKKQFAIGVNEVTR+LERMTPS DSAR MNPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK

XP_023549838.1 ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]2.6e-6787.26Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K AR LNAE+LPEKIWLKKQFAIGVNEVTR+LERMTPS DSARI+NPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEISSL
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+  S +
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEISSL

XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]5.4e-7394.08Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSSAPDAV+QSKPN+DSYEGERLDE LQSIQRE+K ARFLNAESLPEKIWLKKQFAIGVNEVTR+LERMTPSGDSARIMNPNYKACTVKLQA+LL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

TrEMBL top hitse value%identityAlignment
A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X51.7e-6488.31Show/hide
Query:  MGKKPKSSA-PDAVVQSKPNKD-SYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAI
        MGK PKSSA P A +QSKP +D SYEGERLDELL SIQRE+K AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPNYKAC VKLQAI
Subjt:  MGKKPKSSA-PDAVVQSKPNKD-SYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAI

Query:  LLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        LLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
Subjt:  LLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X66.9e-6688.89Show/hide
Query:  MGKKPKSSA-PDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAIL
        MGK PKSSA P A +QSKP +DSYEGERLDELL SIQRE+K AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPNYKAC VKLQAIL
Subjt:  MGKKPKSSA-PDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAIL

Query:  LTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        LTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
Subjt:  LTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

A0A6J1CZ90 ribonuclease P protein subunit p385.5e-6380.5Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSSA   VV+SK ++D YEG+RLDELLQSIQRE+K AR LNAESLP KIWLKKQFA+GVNEVTR+LERMTPSGDSARIMNPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEISSLAN
          +CNPRWLTNH+P+LA+SR VPL+L+KDKEGSLRLGELVNLKTAIAIGIK+   SL N
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEISSLAN

A0A6J1FDN9 ribonuclease P protein subunit p388.7e-6990.79Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K AR LNAESLPEKIWLKKQFAIGVNEVTR+LERMTPSGDSARI+NPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKS

A0A6J1K3C5 ribonuclease P protein subunit p384.8e-6790.73Show/hide
Query:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL
        MGKK KSS P AVVQSK N+DSYEGERLDELLQSIQRE+K ARFLNA+SLPEKIWLKKQFAIGVNEVTR+LERMTPS DSAR MNPNYKACTV+LQAILL
Subjt:  MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILL

Query:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK
Subjt:  TANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK

SwissProt top hitse value%identityAlignment
P78345 Ribonuclease P protein subunit p385.6e-0429.81Show/hide
Query:  LKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEIS
        ++KQ AIGVNEVTR LER                    +L  +L+  +  P  +T+H+  L++SR VP   V     S R+  ++ LK  +A+  K   +
Subjt:  LKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEIS

Query:  SLAN
           +
Subjt:  SLAN

Q80UU2 Ribonuclease P protein subunit p389.5e-0429.25Show/hide
Query:  IWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSE
        + ++KQ  IGVNEVTR LER                    +L  +L+  +  P  +T+H+  L++SR VP   V   + S R+  ++ LK  +A+G +  
Subjt:  IWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSE

Query:  ISSLAN
            A+
Subjt:  ISSLAN

Arabidopsis top hitse value%identityAlignment
AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.3e-3552.2Show/hide
Query:  GKKPKSSAPDAVVQSKPNKDS--YEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAIL
        G  P +        S P K+S  YEGERL  LL  IQR ++ ++  N  SLPEKIWLKKQ AIG+NEVTR+LERM P+  S +  NP       +LQ ++
Subjt:  GKKPKSSAPDAVVQSKPNKDS--YEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAIL

Query:  LTANCNPRWLTNHVPSLAMSRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKSEISSL
        L A+C PR LT H+P+LA SR VP++ V+D K  SLRLGELV LKTA+AIGIK+  + L
Subjt:  LTANCNPRWLTNHVPSLAMSRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKSEISSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGAAGCCTAAATCTTCTGCTCCTGATGCAGTCGTTCAATCCAAACCTAACAAAGATTCCTACGAAGGGGAACGTCTCGATGAATTGCTACAATCGATTCAGAG
AGAGTTAAAGGCAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAGAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAGGTTACTAGAATCCTTGAACGGA
TGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTATAAGGCGTGTACAGTCAAGCTTCAGGCTATACTGTTAACAGCTAATTGCAACCCTCGATGGCTGACA
AACCATGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGC
AATTGGAATAAAGTCTGAGATTTCTAGTCTTGCTAATACACGAAATGGATTTGAGTTCATTTATTCTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGAAGCCTAAATCTTCTGCTCCTGATGCAGTCGTTCAATCCAAACCTAACAAAGATTCCTACGAAGGGGAACGTCTCGATGAATTGCTACAATCGATTCAGAG
AGAGTTAAAGGCAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAGAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAGGTTACTAGAATCCTTGAACGGA
TGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTATAAGGCGTGTACAGTCAAGCTTCAGGCTATACTGTTAACAGCTAATTGCAACCCTCGATGGCTGACA
AACCATGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGC
AATTGGAATAAAGTCTGAGATTTCTAGTCTTGCTAATACACGAAATGGATTTGAGTTCATTTATTCTAGATAA
Protein sequenceShow/hide protein sequence
MGKKPKSSAPDAVVQSKPNKDSYEGERLDELLQSIQRELKAARFLNAESLPEKIWLKKQFAIGVNEVTRILERMTPSGDSARIMNPNYKACTVKLQAILLTANCNPRWLT
NHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSEISSLANTRNGFEFIYSR