CuGenDBv2

Gene ID	HG10009731
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription initiation factor TFIID subunit 11 isoform X3
Genome location	Chr06:9413425..9413985
RNA-Seq Expression	HG10009731
Synteny	HG10009731
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066134.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

6.8e-77

88.02

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSIL DDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-77

87.37

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGD
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRV PNYLDSDLDRRFQALRSRPSS   A  RNPR SQPH QSDSSSRPPPIENLVVDGESQSILGD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGD

Query:  DLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        DLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  DLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

1.0e-77

88.54

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

XP_016903615.1 PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]

1.8e-77

88.02

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

XP_022993807.1 glucosidase 2 subunit beta [Cucurbita maxima]

4.0e-77

87.77

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Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDL
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRV PNYLDSDLDRRFQALRSRPSSA   RNPR SQPH QSDSSSRPPPIENLVVDGESQSILGDDL
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDL

Query:  AARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        AARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  AARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

8.6e-78

88.02

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

3.3e-77

88.02

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSIL DDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

5.1e-78

88.54

Show/hide

Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRV PNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

A0A6J1FGM0 nucleolin

5.6e-77

88.71

Show/hide

Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDD
        +KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRV PNYLDSDLDRRFQALRSRPSS  A  RNPR SQPH QSDSSSRPPPIENLVVDGESQSILGDD
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDD

Query:  LAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA
        LAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  LAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

1.9e-77

87.77

Show/hide

Query:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDL
        +KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRV PNYLDSDLDRRFQALRSRPSSA   RNPR SQPH QSDSSSRPPPIENLVVDGESQSILGDDL
Subjt:  KKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDL

Query:  AARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        AARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  AARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

3.9e-22

43.6

Show/hide

Query:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDLAARFAA
        G ++++VEQLLQAAQD+++LKLSVDSH SR   +YLD DL  RF AL+S+         +  Q   Q       P  +++V +        +DL  RFAA
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDLAARFAA

Query:  LKASLPSSTTPP----PSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR
        LK SLPS+++         I  D D   E+ EV+KLIQWA DAARLDPSP S  DD++ +   SD++ D  R
Subjt:  LKASLPSSTTPP----PSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR

Sequences

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CDS sequence

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ATGGATTCGAGAAAGAAGATGGGAAGAGGCAACGACGACGAACAAGTCGAGCAATTGCTACAAGCAGCTCAAGACGATCTCATGCTGAAATTGAGCGTCGATTCACATAT
GTCGCGTGTATTCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCGTTCCCCGCAATCCTCGCCTTTCTCAGCCGC
ATATTCAATCCGATTCCTCCTCCCGACCGCCGCCGATTGAAAATCTTGTCGTCGATGGCGAATCTCAGTCGATTCTCGGTGACGATCTCGCTGCTAGATTCGCTGCTCTG
AAGGCGTCTTTGCCTTCCTCGACCACGCCGCCTCCGTCGTCGATACCTAACGATCTGGATAGCGACGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGA
TGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGACGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATAGGAGAAAAGAGTGTCGGAAAAAGA
AGGCCGGATGA

mRNA sequence

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Protein sequence

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MDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVFPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDLAARFAAL
KASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG

HG10009731 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome