; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009759 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009759
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB7
Genome locationChr06:9827091..9828704
RNA-Seq ExpressionHG10009759
SyntenyHG10009759
Gene Ontology termsGO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0060213 - positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR003029 - S1 domain
IPR005576 - RNA polymerase Rpb7-like , N-terminal
IPR012340 - Nucleic acid-binding, OB-fold
IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily
IPR045113 - RNA polymerase Rpb7-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3454638.1 hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis]9.4e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

KAG7032688.1 hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

XP_004150740.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus]4.2e-71100Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

XP_022923594.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata]9.4e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

XP_038906688.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida]9.4e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

TrEMBL top hitse value%identityAlignment
A0A0A0KPS4 Uncharacterized protein2.1e-71100Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

A0A2I4HHD1 DNA-directed RNA polymerase II subunit RPB76.0e-7198.51Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

A0A6J0ZV58 DNA-directed RNA polymerase II subunit RPB76.0e-7198.51Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

A0A6J1E6V3 DNA-directed RNA polymerase II subunit RPB7-like4.6e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

A0A6J1JSG6 DNA-directed RNA polymerase II subunit RPB7-like4.6e-7199.25Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

SwissProt top hitse value%identityAlignment
P38421 DNA-directed RNA polymerase II subunit 78.3e-7094.03Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVS HLIPDDMEFQ+GD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

P46279 DNA-directed RNA polymerase II subunit RPB71.8e-7297.01Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV

P62487 DNA-directed RNA polymerase II subunit RPB74.4e-3954.07Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV
         GP+  F+S H IP +MEF  + + P Y T D  +
Subjt:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV

Q5E9B8 DNA-directed RNA polymerase II subunit RPB74.4e-3954.07Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV
         GP+  F+S H IP +MEF  + + P Y T D  +
Subjt:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV

Q7ZW41 DNA-directed RNA polymerase II subunit RPB74.4e-3954.81Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV
         GP+  F+S H IP +MEF  + + P Y T D  V
Subjt:  AGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSDGSV

Arabidopsis top hitse value%identityAlignment
AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein1.3e-0429.89Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEA
        MF+   LE ++++ P      L + + S L            G  V+I  I+++  G +  G G  T+ V  + VVFRPF GE++ A
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEA

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein1.3e-0429.89Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEA
        MF+   LE ++++ P      L + + S L            G  V+I  I+++  G +  G G  T+ V  + VVFRPF GE++ A
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEA

AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain9.6e-1339.76Show/hide
Query:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVP
        G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++GP +I   +H+     EF  G+ P
Subjt:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVP

AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain4.0e-1143.24Show/hide
Query:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD
        G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   GP++ +++S   +PD
Subjt:  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD

AT5G59180.1 DNA-directed RNA polymerase II5.9e-7194.03Show/hide
Query:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE
        MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAE
Subjt:  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAE

Query:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV
        AGPVQIFVS HLIPDDMEFQ+GD+PNYTTSDGSV
Subjt:  AGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTCCGTGAGAACCTGGTGTCAAAACTTATGAAAGATGTTGAGGGCAC
TTGCAGTGGCCGACATGGTTTCGTGGTAGCAATCACGGGAATTGAGAATATTGGAAAAGGGTTGATTCGTGACGGGACAGGTTTCGTCACTTTTCCCGTCAAATACCAGT
GTGTCGTGTTTAGACCATTTAAGGGAGAAATTTTAGAAGCTGTCGTTACGATGGTAAACAAGATGGGGTTCTTTGCTGAAGCTGGACCCGTTCAAATTTTTGTTTCAAAC
CATTTGATACCGGATGATATGGAGTTTCAGTCCGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTACACGCATTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTCCGTGAGAACCTGGTGTCAAAACTTATGAAAGATGTTGAGGGCAC
TTGCAGTGGCCGACATGGTTTCGTGGTAGCAATCACGGGAATTGAGAATATTGGAAAAGGGTTGATTCGTGACGGGACAGGTTTCGTCACTTTTCCCGTCAAATACCAGT
GTGTCGTGTTTAGACCATTTAAGGGAGAAATTTTAGAAGCTGTCGTTACGATGGTAAACAAGATGGGGTTCTTTGCTGAAGCTGGACCCGTTCAAATTTTTGTTTCAAAC
CATTTGATACCGGATGATATGGAGTTTCAGTCCGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTACACGCATTCTCTAA
Protein sequenceShow/hide protein sequence
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSN
HLIPDDMEFQSGDVPNYTTSDGSVYFYFTRIL