CuGenDBv2

Gene ID	HG10009768
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SUPPRESSOR OF ABI3-5
Genome location	Chr06:10013125..10013370
RNA-Seq Expression	HG10009768
Synteny	HG10009768
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000467 - G-patch domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]

2.7e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

XP_011655136.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]

2.7e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

XP_016902976.1 PREDICTED: SUPPRESSOR OF ABI3-5 [Cucumis melo]

2.7e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

XP_022956313.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucurbita moschata]

2.7e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

XP_022989879.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucurbita maxima]

2.7e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KR81 Uncharacterized protein

1.3e-22

98.31

Show/hide

Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

A0A5D3D622 RNA-binding protein 5-B isoform X2

1.3e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

A0A6J1GW06 SUPPRESSOR OF ABI3-5 isoform X1

1.3e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

A0A6J1JH15 SUPPRESSOR OF ABI3-5 isoform X1

1.3e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

A0A6J1JQL0 SUPPRESSOR OF ABI3-5 isoform X2

1.3e-22

98.31

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

SwissProt top hits

e value

%identity

Alignment

F4JCU0 SUPPRESSOR OF ABI3-5

1.1e-18

74.58

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGM EPVQAQ +D RAGLGSQQKK+D   E+Q GD+Y+TL+HKKALARFR+MS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

Arabidopsis top hits

e value

%identity

Alignment

AT3G54230.1 suppressor of abi3-5

7.9e-20

74.58

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGM EPVQAQ +D RAGLGSQQKK+D   E+Q GD+Y+TL+HKKALARFR+MS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

AT3G54230.2 suppressor of abi3-5

7.9e-20

74.58

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Query:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS
        GLG DGSGM EPVQAQ +D RAGLGSQQKK+D   E+Q GD+Y+TL+HKKALARFR+MS
Subjt:  GLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

Sequences

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CDS sequence

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ATGTTGGTATTCACCATCACCATTCTGATGTTAGGATTGTTTTTTCTGGTAACATTTTGCATCCAGGGTCTAGGTACGGATGGAAGTGGAATGACAGAGCCAGTCCAGGC
ACAAGCCATGGATAGCAGGGCGGGACTTGGGAGTCAGCAGAAGAAGATGGATCCAAGCCTCGAGATACAAGCCGGTGACAGCTATAAAACACTCATTCATAAGAAAGCAC
TTGCTCGGTTCCGGGAGATGTCTTAA

mRNA sequence

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Protein sequence

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MLVFTITILMLGLFFLVTFCIQGLGTDGSGMTEPVQAQAMDSRAGLGSQQKKMDPSLEIQAGDSYKTLIHKKALARFREMS

HG10009768 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome