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HG10009782 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009782
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:10324265..10324753
RNA-Seq ExpressionHG10009782
SyntenyHG10009782
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]8.7e-1229.45Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        L  R ++  P CP C  K ES  + +  C  AK +W   +   + +    +SF+E W  L  S + EE  +FA  CW +WN RNS               
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQNQNSNLHLKPKKVDLS-RRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
         + K   E+  S   N +  +H +          W+ PP G  K++VD A KS  S  G+G +
Subjt:  WILKYYDEYVKSQVQNQNSNLHLKPKKVDLS-RRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.6e-1232.43Show/hide
Query:  IESTNYVLIFCRRAKLIWEVLSTNQILQR-NFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWILKYYDEYVKSQVQNQ
        +E T++ +  C+RAK IW ++  +      N N SF + W  L      ++ ++ A   WAIW DRNS      ++ PA++ +WI  Y+  Y ++Q    
Subjt:  IESTNYVLIFCRRAKLIWEVLSTNQILQR-NFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWILKYYDEYVKSQVQNQ

Query:  NSNLHLKPKKVDL---SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
          N  + P++  +   S RW  P D  +K++ DAA +S  +STGLG I
Subjt:  NSNLHLKPKKVDL---SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.0e-2032.12Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        L KRG+   P+C +C  +IE+T++ L  C+RAK +W +L      Q +FN+S ++    L  S +  + ++  +G WAIWNDRN+ R+ + I +  ++S 
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQNQNS---NLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
        WIL Y  ++    V +                +   W  PP G++K++VDAA K     TG+G +
Subjt:  WILKYYDEYVKSQVQNQNS---NLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.3e-1231.25Show/hide
Query:  RGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVL-STNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWI
        RG+  +P C IC ++ ES  +    C+RA+ IW  L      L    N SF E W  L      ++LN+ AI  W IWNDRNS    K ++    K  W+
Subjt:  RGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVL-STNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWI

Query:  LKYYDEYVKSQVQNQNSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
          + D + ++Q+ N +       + V   + W+      +KL+ DAA +   +ST  G I
Subjt:  LKYYDEYVKSQVQNQNSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]3.5e-1327.22Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        L++R ++  P C IC +  E+ ++ L  C RAK +WE+ + +   Q    SS  +    L++S ++ EL +F + CW+IW++RN+      +  PA  ++
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQN------QNSNLHLKPKKVDL-SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
        +   Y  E+ +++ +N        +    +P    + + +W  PP G +KL+ DAA   + ++ G+GA+
Subjt:  WILKYYDEYVKSQVQN------QNSNLHLKPKKVDL-SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

TrEMBL top hitse value%identityAlignment
A0A5E4FZN9 PREDICTED: retrotransposon4.2e-1229.45Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        L  R ++  P CP C  K ES  + +  C  AK +W   +   + +    +SF+E W  L  S + EE  +FA  CW +WN RNS               
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQNQNSNLHLKPKKVDLS-RRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
         + K   E+  S   N +  +H +          W+ PP G  K++VD A KS  S  G+G +
Subjt:  WILKYYDEYVKSQVQNQNSNLHLKPKKVDLS-RRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

A0A6J1BQ49 uncharacterized protein LOC1110047863.2e-1232.43Show/hide
Query:  IESTNYVLIFCRRAKLIWEVLSTNQILQR-NFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWILKYYDEYVKSQVQNQ
        +E T++ +  C+RAK IW ++  +      N N SF + W  L      ++ ++ A   WAIW DRNS      ++ PA++ +WI  Y+  Y ++Q    
Subjt:  IESTNYVLIFCRRAKLIWEVLSTNQILQR-NFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWILKYYDEYVKSQVQNQ

Query:  NSNLHLKPKKVDL---SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
          N  + P++  +   S RW  P D  +K++ DAA +S  +STGLG I
Subjt:  NSNLHLKPKKVDL---SRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

A0A6J1CTE3 uncharacterized protein LOC1110145785.0e-2132.12Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        L KRG+   P+C +C  +IE+T++ L  C+RAK +W +L      Q +FN+S ++    L  S +  + ++  +G WAIWNDRN+ R+ + I +  ++S 
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQNQNS---NLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
        WIL Y  ++    V +                +   W  PP G++K++VDAA K     TG+G +
Subjt:  WILKYYDEYVKSQVQNQNS---NLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

A0A6J1DX30 uncharacterized protein LOC1110248741.1e-1231.25Show/hide
Query:  RGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVL-STNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWI
        RG+  +P C IC ++ ES  +    C+RA+ IW  L      L    N SF E W  L      ++LN+ AI  W IWNDRNS    K ++    K  W+
Subjt:  RGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVL-STNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWI

Query:  LKYYDEYVKSQVQNQNSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
          + D + ++Q+ N +       + V   + W+      +KL+ DAA +   +ST  G I
Subjt:  LKYYDEYVKSQVQNQNSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

A0A803P9P5 Uncharacterized protein3.2e-1227.44Show/hide
Query:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS
        LH R +S    C +C   IEST + L +C+R + IW++ S +       N S  +    ++   +++++  FA   W+IWN+RN  R       P +   
Subjt:  LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSS

Query:  WILKYYDEYVKSQVQNQ--NSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI
        + + Y +E+  +++     +S  H   +       W  PP G +KL+ DAA  +  +++G GAI
Subjt:  WILKYYDEYVKSQVQNQ--NSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCACAAAAGAGGGGTTTCGGTGATTCCTGATTGTCCAATTTGTTTCAACAAAATTGAATCAACAAATTATGTACTAATATTCTGCCGTCGAGCAAAACTCATTTGGGA
GGTTCTGTCCACCAACCAAATTCTCCAAAGGAACTTCAATAGTAGCTTCAAAGAGAGGTGGTTTGAGTTAAATTCGAGTTGCACTAATGAAGAGCTTAATATTTTTGCTA
TTGGCTGCTGGGCTATTTGGAATGATAGGAACTCTGCTCGATTGATGAAACCGATTGCAAATCCTGCTGTGAAAAGTTCGTGGATTCTCAAATATTACGATGAATATGTA
AAATCTCAAGTTCAAAACCAAAATTCAAACCTTCATTTGAAGCCCAAGAAGGTGGATCTCTCCAGAAGATGGCAAAAGCCTCCGGATGGTTTTGTTAAACTCAGTGTCGA
TGCGGCTTGGAAGTCAGATCCCTCTTCAACTGGTTTGGGAGCTATTTAG
mRNA sequenceShow/hide mRNA sequence
CTTCACAAAAGAGGGGTTTCGGTGATTCCTGATTGTCCAATTTGTTTCAACAAAATTGAATCAACAAATTATGTACTAATATTCTGCCGTCGAGCAAAACTCATTTGGGA
GGTTCTGTCCACCAACCAAATTCTCCAAAGGAACTTCAATAGTAGCTTCAAAGAGAGGTGGTTTGAGTTAAATTCGAGTTGCACTAATGAAGAGCTTAATATTTTTGCTA
TTGGCTGCTGGGCTATTTGGAATGATAGGAACTCTGCTCGATTGATGAAACCGATTGCAAATCCTGCTGTGAAAAGTTCGTGGATTCTCAAATATTACGATGAATATGTA
AAATCTCAAGTTCAAAACCAAAATTCAAACCTTCATTTGAAGCCCAAGAAGGTGGATCTCTCCAGAAGATGGCAAAAGCCTCCGGATGGTTTTGTTAAACTCAGTGTCGA
TGCGGCTTGGAAGTCAGATCCCTCTTCAACTGGTTTGGGAGCTATTTAG
Protein sequenceShow/hide protein sequence
LHKRGVSVIPDCPICFNKIESTNYVLIFCRRAKLIWEVLSTNQILQRNFNSSFKERWFELNSSCTNEELNIFAIGCWAIWNDRNSARLMKPIANPAVKSSWILKYYDEYV
KSQVQNQNSNLHLKPKKVDLSRRWQKPPDGFVKLSVDAAWKSDPSSTGLGAI