; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009811 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009811
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationChr06:11003432..11003620
RNA-Seq ExpressionHG10009811
SyntenyHG10009811
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.4e-0549.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.4e-0549.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.4e-0549.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]1.4e-0549.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

XP_022152754.1 uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]2.3e-0547.83Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRTI
        N+CNL+S+ LD +N++LW F+++ ILKAHKLF +I  +  PP++ +
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRTI

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X26.5e-0649.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X36.5e-0649.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X16.5e-0649.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

A0A5D3CLI6 T4.56.5e-0649.21Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE
        N+CNL+S+ LD +N+VLW F+++ ILKAHKL+ +I  T   P RT     T   PPQ NP  E
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRT---IRTEGQPPQVNPENE

A0A6J1DFQ7 uncharacterized protein LOC111020396 isoform X31.1e-0547.83Show/hide
Query:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRTI
        N+CNL+S+ LD +N++LW F+++ ILKAHKLF +I  +  PP++ +
Subjt:  NMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGTGCAATCTCGTATCTGTTCATCTTGATTTGTCTAATTATGTACTTTGGAACTTTAAGATTTCTCCGATCCTTAAGGCTCACAAGTTGTTCAAGTATATTTA
TGCAACGATTGCTCCACCAGATCGCACCATTCGAACTGAAGGTCAACCTCCTCAAGTGAATCCTGAGAATGAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATGTGCAATCTCGTATCTGTTCATCTTGATTTGTCTAATTATGTACTTTGGAACTTTAAGATTTCTCCGATCCTTAAGGCTCACAAGTTGTTCAAGTATATTTA
TGCAACGATTGCTCCACCAGATCGCACCATTCGAACTGAAGGTCAACCTCCTCAAGTGAATCCTGAGAATGAGCAGTGA
Protein sequenceShow/hide protein sequence
MNMCNLVSVHLDLSNYVLWNFKISPILKAHKLFKYIYATIAPPDRTIRTEGQPPQVNPENEQ