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HG10009834 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009834
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr06:11507693..11508193
RNA-Seq ExpressionHG10009834
SyntenyHG10009834
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7832946.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.9e-0654.17Show/hide
Query:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGS-LQYGSWLK
        WI  KYE+LP FCYGCGRIGH  N C +G    D  + S   YG WL+
Subjt:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGS-LQYGSWLK

OMO81698.1 Zinc finger, CCHC-type [Corchorus capsularis]2.5e-0645.31Show/hide
Query:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKN
        W+  KYERLPDFC+ CGR+GHV  DCK+     D       YG W+K     +    K +PSKN
Subjt:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKN

OMO99383.1 hypothetical protein COLO4_13287 [Corchorus olitorius]1.9e-0652.08Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLK
        MW  IKYERL DFCY CGR+GH   +C + +   + D G  +YGSWL+
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLK

PON85093.1 Zinc knuckle CX2CX4HX4C [Trema orientale]1.1e-0646.3Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQ
        +W+  KYE++PDFC+ CGR+GH VN C     E  L  G  QY  WL+   SN+
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQ

XP_042950312.1 uncharacterized protein LOC122282425 [Carya illinoinensis]1.3e-0756Show/hide
Query:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQG
        W++  YERLP+FCY CGRIGHV  DC+  + E D+  GSL YG WL+  G
Subjt:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQG

TrEMBL top hitse value%identityAlignment
A0A1R3IGI2 Zinc finger, CCHC-type1.2e-0645.31Show/hide
Query:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKN
        W+  KYERLPDFC+ CGR+GHV  DCK+     D       YG W+K     +    K +PSKN
Subjt:  WIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKN

A0A2N9EL44 ATP-dependent DNA helicase1.4e-0745.16Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHD----LDIGSLQYGSWLKFQGSNQRCRR
        +W+QIKYERL DFCYGCGR+ H+  DCKWG    +     D     YG WL  +   ++  R
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHD----LDIGSLQYGSWLKFQGSNQRCRR

A0A2N9G9P3 Uncharacterized protein1.9e-0735.77Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDC-KWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKNEKDKPPSDFSFFQPEKASSN------GKNTIDPR
        +WI  KYERLP+FCY CG + H   DC  W   +  L I   Q+GSWL+   SN+R  RK         KPP       P   S+N        N+  P 
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDC-KWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKNEKDKPPSDFSFFQPEKASSN------GKNTIDPR

Query:  IIPVTKEAACSKENKENNSLPPD
        IIP +  +  S       S PP+
Subjt:  IIPVTKEAACSKENKENNSLPPD

A0A2N9IQS7 ATP-dependent DNA helicase1.4e-0745.16Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHD----LDIGSLQYGSWLKFQGSNQRCRR
        +W+QIKYERL DFCYGCGR+ H+  DCKWG    +     D     YG WL  +   ++  R
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHD----LDIGSLQYGSWLKFQGSNQRCRR

A0A2P5EHV3 Zinc knuckle CX2CX4HX4C5.4e-0746.3Show/hide
Query:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQ
        +W+  KYE++PDFC+ CGR+GH VN C     E  L  G  QY  WL+   SN+
Subjt:  MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATCCAAATCAAATATGAGAGGCTGCCGGATTTTTGCTATGGCTGTGGTAGAATAGGACATGTTGTTAACGATTGCAAATGGGGATCTTTTGAACATGATCTAGA
TATTGGTTCTTTACAATATGGGAGTTGGCTTAAATTTCAAGGGAGTAATCAAAGGTGTAGAAGGAAGAATTCACCATCAAAGAATGAAAAAGATAAGCCGCCCTCAGATT
TCTCTTTTTTCCAACCAGAAAAAGCTTCTTCAAATGGGAAAAATACTATTGATCCAAGAATTATTCCTGTCACAAAAGAAGCTGCCTGCTCAAAGGAAAACAAAGAGAAC
AATAGCCTTCCTCCAGATTTACTCTTTGATTTAAACTTGAGTTCTTATGAGTTTGAGTCCACAAAAAGAAGTAATGACCCTTCGCCAAGCAACATAAAGTTATCTTCTTT
CCTTAGCGAAAGCTCTGAAGGTCTCCCTATCCCTATCTGGTCTAATTCTCAGGCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATCCAAATCAAATATGAGAGGCTGCCGGATTTTTGCTATGGCTGTGGTAGAATAGGACATGTTGTTAACGATTGCAAATGGGGATCTTTTGAACATGATCTAGA
TATTGGTTCTTTACAATATGGGAGTTGGCTTAAATTTCAAGGGAGTAATCAAAGGTGTAGAAGGAAGAATTCACCATCAAAGAATGAAAAAGATAAGCCGCCCTCAGATT
TCTCTTTTTTCCAACCAGAAAAAGCTTCTTCAAATGGGAAAAATACTATTGATCCAAGAATTATTCCTGTCACAAAAGAAGCTGCCTGCTCAAAGGAAAACAAAGAGAAC
AATAGCCTTCCTCCAGATTTACTCTTTGATTTAAACTTGAGTTCTTATGAGTTTGAGTCCACAAAAAGAAGTAATGACCCTTCGCCAAGCAACATAAAGTTATCTTCTTT
CCTTAGCGAAAGCTCTGAAGGTCTCCCTATCCCTATCTGGTCTAATTCTCAGGCAGTTTAG
Protein sequenceShow/hide protein sequence
MWIQIKYERLPDFCYGCGRIGHVVNDCKWGSFEHDLDIGSLQYGSWLKFQGSNQRCRRKNSPSKNEKDKPPSDFSFFQPEKASSNGKNTIDPRIIPVTKEAACSKENKEN
NSLPPDLLFDLNLSSYEFESTKRSNDPSPSNIKLSSFLSESSEGLPIPIWSNSQAV