; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009847 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009847
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr06:11818575..11818898
RNA-Seq ExpressionHG10009847
SyntenyHG10009847
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW77127.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.5e-1550.54Show/hide
Query:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +TN  LIPK +    + D   ISLCNV +K+  K++ NR+  +L  V+S++QS FV R SI DN++I+HE LHF+KR + RR+G AALK+DIS
Subjt:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

XP_010644016.1 PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]1.5e-1550.54Show/hide
Query:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +TN  LIPK +    + D   ISLCNV +K+  K++ NR+  +L  V+S++QS FV R SI DN++I+HE LHF+KR + RR+G AALK+DIS
Subjt:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.8e-1651.52Show/hide
Query:  NIKNWNKTNTTLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +IK WN T   LIPK+   + I DF  ISLCNV YK++ K I NR+  ++  VIS +QS FV   +I DNVII HECLH +   K+  +G+AALKLD+S
Subjt:  NIKNWNKTNTTLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]6.5e-1651.06Show/hide
Query:  NKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        NKTN TL+PK+ N TK+ DF  ISLCNV YKL+ KV+ NR+  IL  +IS++QS F+S   I DNV+++ E +H+++  K  + G AA+KLD+S
Subjt:  NKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]5.0e-1653.54Show/hide
Query:  NIKNWNKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        N    N T   LIPK+AN  KV D+  ISLCNV Y++V K I NRM PIL  +IS  QS F+    I DNVII +ECLH ++  K ++ GL ALKLDIS
Subjt:  NIKNWNKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

TrEMBL top hitse value%identityAlignment
A0A2N9EVR9 F-box domain-containing protein4.1e-1653.19Show/hide
Query:  NKTNTTLIPKVANTK-VIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        N T  TLIPKV N K V+DF  ISLCNV YKL+ KV+ NR+  +L +++S+SQS FV    I DN++++ E LH M+  KA R+G  ALKLD+S
Subjt:  NKTNTTLIPKVANTK-VIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

A0A2N9HAW3 Uncharacterized protein4.1e-1653.19Show/hide
Query:  NKTNTTLIPKVANTK-VIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        N T  TLIPKV N K V+DF  ISLCNV YKL+ KV+ NR+  +L +++S+SQS FV    I DN++++ E LH M+  KA R+G  ALKLD+S
Subjt:  NKTNTTLIPKVANTK-VIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

A0A438GY67 Transposon TX1 uncharacterized 149 kDa protein7.1e-1650.54Show/hide
Query:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +TN  LIPK +    + D   ISLCNV +K+  K++ NR+  +L  V+S++QS FV R SI DN++I+HE LHF+KR + RR+G AALK+DIS
Subjt:  KTNTTLIPKVANT-KVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

A0A6J1DX30 uncharacterized protein LOC1110248741.9e-1651.52Show/hide
Query:  NIKNWNKTNTTLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +IK WN T   LIPK+   + I DF  ISLCNV YK++ K I NR+  ++  VIS +QS FV   +I DNVII HECLH +   K+  +G+AALKLD+S
Subjt:  NIKNWNKTNTTLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

A0A7N2LT95 Reverse transcriptase domain-containing protein9.2e-1653.06Show/hide
Query:  IKNWNKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS
        +K+ N T  TLIPKV N  KV DF  ISLCNV YK++ KVI NR+ P+L S+IS++QS F +   I DN++I+ E LH MK +   R G  ALKLD+S
Subjt:  IKNWNKTNTTLIPKVAN-TKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDIS

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein6.0e-0436.78Show/hide
Query:  TLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLD
        +L+PK  + ++I ++  +SL +  YK+V K I  R+  +L  VI   QS  V   +I DNV +  + LHF +R     L LA L LD
Subjt:  TLIPKVANTKVI-DFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATATTAAGAATTGGAACAAAACCAACACTACACTTATACCGAAGGTGGCTAACACAAAGGTGATAGATTTTCCATCGATTAGTCTTTGTAACGTACCCTATAA
GTTGGTCATGAAGGTCATTGTCAATCGCATGACACCTATTCTCCAGTCTGTCATCTCTCAATCACAGTCGACTTTTGTTTCTAGGCACTCTATCCGCGATAATGTGATCA
TTAGTCATGAATGTTTGCACTTTATGAAGAGGGATAAGGCTAGGAGATTGGGTTTGGCGGCACTTAAGTTGGATATAAGTGATCTGCCAAAAGTGTACGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATATTAAGAATTGGAACAAAACCAACACTACACTTATACCGAAGGTGGCTAACACAAAGGTGATAGATTTTCCATCGATTAGTCTTTGTAACGTACCCTATAA
GTTGGTCATGAAGGTCATTGTCAATCGCATGACACCTATTCTCCAGTCTGTCATCTCTCAATCACAGTCGACTTTTGTTTCTAGGCACTCTATCCGCGATAATGTGATCA
TTAGTCATGAATGTTTGCACTTTATGAAGAGGGATAAGGCTAGGAGATTGGGTTTGGCGGCACTTAAGTTGGATATAAGTGATCTGCCAAAAGTGTACGAGTGA
Protein sequenceShow/hide protein sequence
MANIKNWNKTNTTLIPKVANTKVIDFPSISLCNVPYKLVMKVIVNRMTPILQSVISQSQSTFVSRHSIRDNVIISHECLHFMKRDKARRLGLAALKLDISDLPKVYE