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HG10009864 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009864
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:12249276..12257236
RNA-Seq ExpressionHG10009864
SyntenyHG10009864
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV81730.1 RVT_3 domain-containing protein/zf-RVT domain-containing protein [Cephalotus follicularis]3.4e-0629.82Show/hide
Query:  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV
        W PP+  ++KL              +G ++R+  G+V+VA+S F  Y ++ ++ EALA+L G++L    G  ++ +E+DA+ ++  I  NS   S YG V
Subjt:  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV

Query:  LVVVAAVQPLPFSH
        +  + ++ P    H
Subjt:  LVVVAAVQPLPFSH

KAF4379885.1 hypothetical protein G4B88_021018 [Cannabis sativa]8.2e-0831.75Show/hide
Query:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS
        HS       WSPP  G+ K+   +           G +IRD  G+VVVA + ++   L    AE+LA+  GL L   W L ++ + +D Q ++ A++  +
Subjt:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS

Query:  MKCSPYGFVLVVVAAVQPLPFSHRRC
           S +G +LV +A  +P  F  RRC
Subjt:  MKCSPYGFVLVVVAAVQPLPFSHRRC

TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]3.4e-0636.36Show/hide
Query:  VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCS
        V R RWS P +GS K+           +V  GAIIRDS G V+VA+   +    +   AEA+A+L GL++    GL+   +E+DAQ++V  I   S  C+
Subjt:  VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCS

Query:  PYGFVLV---VVAAVQPLPFS
          G VL    ++A++  +P S
Subjt:  PYGFVLV---VVAAVQPLPFS

XP_037439691.1 uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides]9.0e-0739.13Show/hide
Query:  RWSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS
        RW  P  G +KL V            +GA++RDSSG  + AS  F  Y ++  + EALALL GL+L  H G+  + VE+D+Q +V+A+++ S
Subjt:  RWSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS

XP_039832956.1 uncharacterized protein LOC120693663 isoform X1 [Panicum virgatum]2.2e-0530.16Show/hide
Query:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS
        H++  G + W  P    LK+               GA+IR+S G VV A +  + + L++F  E +A L G+K+    G+ NV +E DA  L  A+  NS
Subjt:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS

Query:  MKCSPYGFVLVVVAAVQPLPFSHRRC
         + S  G ++  + A+    FS   C
Subjt:  MKCSPYGFVLVVVAAVQPLPFSHRRC

TrEMBL top hitse value%identityAlignment
A0A1Q3CNA3 RVT_3 domain-containing protein/zf-RVT domain-containing protein1.7e-0629.82Show/hide
Query:  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV
        W PP+  ++KL              +G ++R+  G+V+VA+S F  Y ++ ++ EALA+L G++L    G  ++ +E+DA+ ++  I  NS   S YG V
Subjt:  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV

Query:  LVVVAAVQPLPFSH
        +  + ++ P    H
Subjt:  LVVVAAVQPLPFSH

A0A5C7HA98 CCHC-type domain-containing protein1.7e-0636.36Show/hide
Query:  VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCS
        V R RWS P +GS K+           +V  GAIIRDS G V+VA+   +    +   AEA+A+L GL++    GL+   +E+DAQ++V  I   S  C+
Subjt:  VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCS

Query:  PYGFVLV---VVAAVQPLPFS
          G VL    ++A++  +P S
Subjt:  PYGFVLV---VVAAVQPLPFS

A0A7J6GAB1 RNase H domain-containing protein4.0e-0831.75Show/hide
Query:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS
        HS       WSPP  G+ K+   +           G +IRD  G+VVVA + ++   L    AE+LA+  GL L   W L ++ + +D Q ++ A++  +
Subjt:  HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENS

Query:  MKCSPYGFVLVVVAAVQPLPFSHRRC
           S +G +LV +A  +P  F  RRC
Subjt:  MKCSPYGFVLVVVAAVQPLPFSHRRC

A0A7J6I1Z3 RNase H domain-containing protein1.4e-0536.14Show/hide
Query:  AIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPL
        A+IRDS G +VVA++ FL   +    A+A  +LHG+ L R W + NV V +D+Q ++KA+S  +   + +G + V  A ++ +
Subjt:  AIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPL

A0A803QGC3 Uncharacterized protein3.7e-0630.3Show/hide
Query:  WSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV
        W PP  G   +   +            A+IRDS G +VVA++ FL   +    A+A  +LHG+ L R W + NV V +D+Q ++KA+S  +   + +G +
Subjt:  WSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFV

Query:  L----VVVAAVQPLP--FSHRRCVEQQWAVAVVAVVQSSIHGASSCWSSLV-RTVAAVAVAVVPS
        +    ++ ++ Q L   F HR C +    VA      S +   S  W+ L+    AA+ +A VPS
Subjt:  L----VVVAAVQPLP--FSHRRCVEQQWAVAVVAVVQSSIHGASSCWSSLV-RTVAAVAVAVVPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGACATTCTGCAAATGTGGGAAGAGATCGGTGGTCTCCTCCGGTTGTTGGAAGTCTTAAACTCAAAGTGAGGTCAGGGGCTATCATCCGCGACTCGTCTGGGGTGGTGGT
GGTTGCTTCTTCTCATTTTCTTCTTTATCAGTTGGAGTCCTTTGCAGCGGAGGCTTTGGCCCTTCTTCACGGACTGAAGCTGGTTCGACATTGGGGGTTAGTGAATGTTC
CTGTTGAAGCTGATGCTCAAGCGCTCGTCAAAGCCATTTCTGAGAATAGTATGAAATGCTCCCCTTATGGGTTTGTGCTCGTGGTCGTCGCTGCTGTCCAGCCATTACCG
TTCAGCCATCGTCGTTGCGTGGAGCAGCAGTGGGCCGTCGCTGTCGTTGCCGTCGTGCAGTCGAGCATTCATGGAGCGTCGTCGTGCTGGAGCAGTCTCGTCCGTACCGT
CGCTGCTGTTGCCGTTGCTGTCGTGCCATCTCGTCCAGCCGCCGGATCTGTCCAGTTCATCCCGGATCTCACAAATCTAGTCTAG
mRNA sequenceShow/hide mRNA sequence
AGACATTCTGCAAATGTGGGAAGAGATCGGTGGTCTCCTCCGGTTGTTGGAAGTCTTAAACTCAAAGTGAGGTCAGGGGCTATCATCCGCGACTCGTCTGGGGTGGTGGT
GGTTGCTTCTTCTCATTTTCTTCTTTATCAGTTGGAGTCCTTTGCAGCGGAGGCTTTGGCCCTTCTTCACGGACTGAAGCTGGTTCGACATTGGGGGTTAGTGAATGTTC
CTGTTGAAGCTGATGCTCAAGCGCTCGTCAAAGCCATTTCTGAGAATAGTATGAAATGCTCCCCTTATGGGTTTGTGCTCGTGGTCGTCGCTGCTGTCCAGCCATTACCG
TTCAGCCATCGTCGTTGCGTGGAGCAGCAGTGGGCCGTCGCTGTCGTTGCCGTCGTGCAGTCGAGCATTCATGGAGCGTCGTCGTGCTGGAGCAGTCTCGTCCGTACCGT
CGCTGCTGTTGCCGTTGCTGTCGTGCCATCTCGTCCAGCCGCCGGATCTGTCCAGTTCATCCCGGATCTCACAAATCTAGTCTAG
Protein sequenceShow/hide protein sequence
RHSANVGRDRWSPPVVGSLKLKVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLP
FSHRRCVEQQWAVAVVAVVQSSIHGASSCWSSLVRTVAAVAVAVVPSRPAAGSVQFIPDLTNLV