; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009874 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009874
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr06:12507535..12507930
RNA-Seq ExpressionHG10009874
SyntenyHG10009874
Gene Ontology termsGO:0000049 - tRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067379.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.3e-5488.89Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSP+YLTYPFLVKAT+KLLN+ELGMA+HV IVK+GHEIDKFIQNSLIHMYASCRDIASA KVFDEM TKNLV+WNAMLDGYAKCG+LNMAREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

XP_008460457.1 PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Cucumis melo]1.5e-5489.74Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSP+YLTYPFLVKAT+KLLN+ELGMA+HV IVKSGHEIDKFIQNSLIHMYASCRDIASA KVFDEM TKNLV+WNAMLDGYAKCG+LNMAREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

XP_011655189.1 pentatricopeptide repeat-containing protein At5g08305 [Cucumis sativus]1.6e-5692.31Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSPDYLTYPFLVKAT+KLLN+ELGMAVHV IVKSGHEIDKFIQNSLIHMYASCRDIASA KVFDEMP KNLV+WNAMLDGYAKCGDLNMAREVFN
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPE+DVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

XP_022942610.1 pentatricopeptide repeat-containing protein At5g08305 [Cucurbita moschata]2.0e-5183.76Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        MLRNGVSPDY+TYPFL KATAKLLNR+LGMAVHV + K+GHE+D+F+ NSLIHMYASC DIA A KVFDEMPTKNLVSWNAMLDGYAKCGD+N AREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LM ERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

XP_038874278.1 pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Benincasa hispida]2.9e-5894.87Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHV +VKSGHEIDKFIQNSLIHMYASCRDI SA KVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMP+RDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

TrEMBL top hitse value%identityAlignment
A0A0A0KMZ3 Uncharacterized protein7.7e-5792.31Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSPDYLTYPFLVKAT+KLLN+ELGMAVHV IVKSGHEIDKFIQNSLIHMYASCRDIASA KVFDEMP KNLV+WNAMLDGYAKCGDLNMAREVFN
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPE+DVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

A0A1S3CCZ9 pentatricopeptide repeat-containing protein At5g083057.2e-5589.74Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSP+YLTYPFLVKAT+KLLN+ELGMA+HV IVKSGHEIDKFIQNSLIHMYASCRDIASA KVFDEM TKNLV+WNAMLDGYAKCG+LNMAREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

A0A5A7VQ87 Pentatricopeptide repeat-containing protein1.6e-5488.89Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSP+YLTYPFLVKAT+KLLN+ELGMA+HV IVK+GHEIDKFIQNSLIHMYASCRDIASA KVFDEM TKNLV+WNAMLDGYAKCG+LNMAREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

A0A5D3DTD4 Pentatricopeptide repeat-containing protein7.2e-5589.74Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML+NGVSP+YLTYPFLVKAT+KLLN+ELGMA+HV IVKSGHEIDKFIQNSLIHMYASCRDIASA KVFDEM TKNLV+WNAMLDGYAKCG+LNMAREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LMPERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

A0A6J1FWL8 pentatricopeptide repeat-containing protein At5g083059.8e-5283.76Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        MLRNGVSPDY+TYPFL KATAKLLNR+LGMAVHV + K+GHE+D+F+ NSLIHMYASC DIA A KVFDEMPTKNLVSWNAMLDGYAKCGD+N AREVF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
        LM ERDVVSWSSLIDG+
Subjt:  LMPERDVVSWSSLIDGF

SwissProt top hitse value%identityAlignment
P0C8Q7 Pentatricopeptide repeat-containing protein At5g083055.0e-3762.39Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        MLR G+ PD++TYPFL+K++++L NR+LG ++H  +VKSG E D FI N+LIHMY S RD ASA K+FDEMP KNLV+WN++LD YAK GD+  AR VF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         M ERDVV+WSS+IDG+
Subjt:  LMPERDVVSWSSLIDGF

Q683I9 Pentatricopeptide repeat-containing protein At3g628902.0e-2544.44Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        M  + VSPD+ T+PFL+ +    L+  LG   H QI+  G + D F++ SL++MY+SC D+ SA +VFD+  +K+L +WN++++ YAK G ++ AR++F+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         MPER+V+SWS LI+G+
Subjt:  LMPERDVVSWSSLIDGF

Q9FG16 Pentatricopeptide repeat-containing protein At5g065403.0e-2642.74Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML++ + PD +T+PFL+KA++++    +G   H QIV+ G + D +++NSL+HMYA+C  IA+A ++F +M  +++VSW +M+ GY KCG +  ARE+F+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         MP R++ +WS +I+G+
Subjt:  LMPERDVVSWSSLIDGF

Q9FHR3 Putative pentatricopeptide repeat-containing protein At5g375706.0e-2239.32Show/hide
Query:  MLRNGVS-PDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVF
        M+R G++ PD  T+P ++K  +      +G +VH  +++ G + D  +  S +  Y  C+D+ SA KVF EMP +N VSW A++  Y K G+L  A+ +F
Subjt:  MLRNGVS-PDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVF

Query:  NLMPERDVVSWSSLIDG
        +LMPER++ SW++L+DG
Subjt:  NLMPERDVVSWSSLIDG

Q9MAT2 Pentatricopeptide repeat-containing protein At1g048402.0e-2241.32Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTK----NLVSWNAMLDGYAKCGDLNMAR
        MLR GV PD LT+PF++K+ +KL  R LG A+H   +K+  + D F++ SL+ MYA    +  A +VF+E P +    +++ WN +++GY +  D++MA 
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTK----NLVSWNAMLDGYAKCGDLNMAR

Query:  EVFNLMPERDVVSWSSLIDGF
         +F  MPER+  SWS+LI G+
Subjt:  EVFNLMPERDVVSWSSLIDGF

Arabidopsis top hitse value%identityAlignment
AT1G04840.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.5e-2341.32Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTK----NLVSWNAMLDGYAKCGDLNMAR
        MLR GV PD LT+PF++K+ +KL  R LG A+H   +K+  + D F++ SL+ MYA    +  A +VF+E P +    +++ WN +++GY +  D++MA 
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTK----NLVSWNAMLDGYAKCGDLNMAR

Query:  EVFNLMPERDVVSWSSLIDGF
         +F  MPER+  SWS+LI G+
Subjt:  EVFNLMPERDVVSWSSLIDGF

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-2644.44Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        M  + VSPD+ T+PFL+ +    L+  LG   H QI+  G + D F++ SL++MY+SC D+ SA +VFD+  +K+L +WN++++ YAK G ++ AR++F+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         MPER+V+SWS LI+G+
Subjt:  LMPERDVVSWSSLIDGF

AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-2742.74Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        ML++ + PD +T+PFL+KA++++    +G   H QIV+ G + D +++NSL+HMYA+C  IA+A ++F +M  +++VSW +M+ GY KCG +  ARE+F+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         MP R++ +WS +I+G+
Subjt:  LMPERDVVSWSSLIDGF

AT5G08305.1 Pentatricopeptide repeat (PPR) superfamily protein3.6e-3862.39Show/hide
Query:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN
        MLR G+ PD++TYPFL+K++++L NR+LG ++H  +VKSG E D FI N+LIHMY S RD ASA K+FDEMP KNLV+WN++LD YAK GD+  AR VF+
Subjt:  MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFN

Query:  LMPERDVVSWSSLIDGF
         M ERDVV+WSS+IDG+
Subjt:  LMPERDVVSWSSLIDGF

AT5G37570.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.2e-2339.32Show/hide
Query:  MLRNGVS-PDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVF
        M+R G++ PD  T+P ++K  +      +G +VH  +++ G + D  +  S +  Y  C+D+ SA KVF EMP +N VSW A++  Y K G+L  A+ +F
Subjt:  MLRNGVS-PDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVF

Query:  NLMPERDVVSWSSLIDG
        +LMPER++ SW++L+DG
Subjt:  NLMPERDVVSWSSLIDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACGAAATGGGGTGTCCCCTGATTATTTGACATACCCTTTTCTGGTGAAGGCGACTGCCAAATTATTGAATCGGGAGCTTGGGATGGCAGTGCATGTTCAAATTGT
GAAATCTGGGCACGAGATTGACAAATTCATACAGAATTCATTGATTCACATGTATGCCTCTTGTAGAGATATTGCATCTGCATGCAAGGTGTTCGATGAAATGCCAACGA
AGAATTTGGTGTCTTGGAATGCCATGTTGGATGGGTATGCCAAATGTGGGGATTTGAATATGGCTAGGGAGGTGTTTAATTTAATGCCTGAGAGGGATGTTGTGTCATGG
AGCTCTTTGATCGATGGGTTTTGTGTGCCTGTGCCCATTTGGGTGCACTTGAACATGGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTACGAAATGGGGTGTCCCCTGATTATTTGACATACCCTTTTCTGGTGAAGGCGACTGCCAAATTATTGAATCGGGAGCTTGGGATGGCAGTGCATGTTCAAATTGT
GAAATCTGGGCACGAGATTGACAAATTCATACAGAATTCATTGATTCACATGTATGCCTCTTGTAGAGATATTGCATCTGCATGCAAGGTGTTCGATGAAATGCCAACGA
AGAATTTGGTGTCTTGGAATGCCATGTTGGATGGGTATGCCAAATGTGGGGATTTGAATATGGCTAGGGAGGTGTTTAATTTAATGCCTGAGAGGGATGTTGTGTCATGG
AGCTCTTTGATCGATGGGTTTTGTGTGCCTGTGCCCATTTGGGTGCACTTGAACATGGGAGGATGA
Protein sequenceShow/hide protein sequence
MLRNGVSPDYLTYPFLVKATAKLLNRELGMAVHVQIVKSGHEIDKFIQNSLIHMYASCRDIASACKVFDEMPTKNLVSWNAMLDGYAKCGDLNMAREVFNLMPERDVVSW
SSLIDGFCVPVPIWVHLNMGG