; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009879 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009879
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBED-type domain-containing protein
Genome locationChr06:12573073..12573483
RNA-Seq ExpressionHG10009879
SyntenyHG10009879
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9607737.1 hypothetical protein IFM89_000084 [Coptis chinensis]1.0e-1855.56Show/hide
Query:  TSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAK
        ++SN+G SS   S AT +  S  E +  PLW+YVT+  RL++GGGN SWQCNFC+ PKKSSYTRVRADLL LGG  I +C K +  D + MQ L+D+ K
Subjt:  TSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAK

XP_022156304.1 uncharacterized protein LOC111023231 isoform X1 [Momordica charantia]9.8e-2553.38Show/hide
Query:  ASSSSSTSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRL
        A+S+   S+    SS     + +IS S++E+E+ PLW+YVTKNQRLNE GGN+SWQCNFC   K+SSYTRVRA L+ L GY IG+C K T +D A MQRL
Subjt:  ASSSSSTSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRL

Query:  EDQAKDRMAK--PRNIPLPP---SFVLSSGAMS
        ED+AK R  K  P+ + LPP   +   S G+MS
Subjt:  EDQAKDRMAK--PRNIPLPP---SFVLSSGAMS

XP_022156306.1 uncharacterized protein LOC111023231 isoform X2 [Momordica charantia]4.7e-2759.46Show/hide
Query:  TISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPP--
        +IS S++E+E+ PLW+YVTKNQRLNE GGN+SWQCNFC   K+SSYTRVRA L+ L GY IG+C K T +D A MQRLED+AK R  K  P+ + LPP  
Subjt:  TISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPP--

Query:  -SFVLSSGAMS
         +   S G+MS
Subjt:  -SFVLSSGAMS

XP_038721052.1 uncharacterized protein LOC120013346 isoform X1 [Tripterygium wilfordii]9.5e-2045.97Show/hide
Query:  SSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDR
        S N+  S+T  +   + SS  VE+  KPLW+YV + ++   GGGN+SW CNFCH  K +SYTRVRA LL +    I  C   T +D A MQRLE++AK+R
Subjt:  SSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDR

Query:  --MAKPRNIPLPPSFVLSSGAMSI
           + P+ +PLPPS + S G  +I
Subjt:  --MAKPRNIPLPPSFVLSSGAMSI

XP_038891577.1 uncharacterized protein LOC120080967 [Benincasa hispida]1.4e-2656.36Show/hide
Query:  SVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPPSFVLSSG
        + +++ KPLWQYVTKN+RLNEG GNISWQCNFC   KK SYTRVRA LL L G+ IG+C K T +D A MQ+LED+AK R+A+  P+ +PLPPS  + + 
Subjt:  SVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPPSFVLSSG

Query:  AMSITPPRGS
        + S     G+
Subjt:  AMSITPPRGS

TrEMBL top hitse value%identityAlignment
A0A1Q3C4M6 DUF659 domain-containing protein2.4e-1642.98Show/hide
Query:  PSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIP
        PS  ++ +SS  E+  KP W+++TK  + NE GGN+SW+CNFC    KSSYTRVRA LL + G  +G C K T +D  +MQ+L+++A  R+     + +P
Subjt:  PSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIP

Query:  LPPSFVLSSGAMSI
        LPPS    S ++ +
Subjt:  LPPSFVLSSGAMSI

A0A5B7AFB0 Uncharacterized protein6.4e-2253.1Show/hide
Query:  ATTISSSSVEEEL-KPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAKP--RNIPLP
        +T  SSSS +E++ KPLW+YV K  +L++GGGNISWQCNFCH  KKSSYTRVRA LL L G  I  CSK T +D   MQ+LED+ K R+     + +PLP
Subjt:  ATTISSSSVEEEL-KPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAKP--RNIPLP

Query:  PSFVLSSGAMSIT
         S +   G+ S +
Subjt:  PSFVLSSGAMSIT

A0A5B7C0N1 BED-type domain-containing protein (Fragment)1.2e-2057.45Show/hide
Query:  KPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPPSFVLSSG
        KPLW+YVTK +RL +GGGNISWQCNFC+  KKSSYTRVRA L+ + G+ I  CSK T  + + MQ+LED+   R     P+ +PLPPS  LS G
Subjt:  KPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPPSFVLSSG

A0A6J1DT13 uncharacterized protein LOC111023231 isoform X14.7e-2553.38Show/hide
Query:  ASSSSSTSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRL
        A+S+   S+    SS     + +IS S++E+E+ PLW+YVTKNQRLNE GGN+SWQCNFC   K+SSYTRVRA L+ L GY IG+C K T +D A MQRL
Subjt:  ASSSSSTSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRL

Query:  EDQAKDRMAK--PRNIPLPP---SFVLSSGAMS
        ED+AK R  K  P+ + LPP   +   S G+MS
Subjt:  EDQAKDRMAK--PRNIPLPP---SFVLSSGAMS

A0A6J1DUJ6 uncharacterized protein LOC111023231 isoform X22.3e-2759.46Show/hide
Query:  TISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPP--
        +IS S++E+E+ PLW+YVTKNQRLNE GGN+SWQCNFC   K+SSYTRVRA L+ L GY IG+C K T +D A MQRLED+AK R  K  P+ + LPP  
Subjt:  TISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMAK--PRNIPLPP--

Query:  -SFVLSSGAMS
         +   S G+MS
Subjt:  -SFVLSSGAMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTTCCTCTTCATCTACATCTAGTAATAGTGGTCAATCATCAACGATTCCTTCAATAGCAACTACAATCTCATCCTCTAGTGTTGAAGAGGAATTAAAACCACT
TTGGCAATATGTGACCAAAAATCAAAGATTAAATGAAGGAGGTGGAAACATTTCATGGCAATGTAATTTTTGTCATTGTCCAAAAAAGAGTTCTTATACAAGGGTTAGAG
CTGATTTATTAGGCTTAGGTGGTTATAGAATTGGAGTGTGTAGTAAAGGTACCCCTCAAGATAAGGCCAACATGCAAAGATTAGAAGATCAGGCGAAAGATCGTATGGCT
AAACCTAGAAACATTCCTTTACCACCTTCGTTTGTCCTTTCTAGTGGGGCTATGAGTATAACTCCACCAAGAGGAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTTCCTCTTCATCTACATCTAGTAATAGTGGTCAATCATCAACGATTCCTTCAATAGCAACTACAATCTCATCCTCTAGTGTTGAAGAGGAATTAAAACCACT
TTGGCAATATGTGACCAAAAATCAAAGATTAAATGAAGGAGGTGGAAACATTTCATGGCAATGTAATTTTTGTCATTGTCCAAAAAAGAGTTCTTATACAAGGGTTAGAG
CTGATTTATTAGGCTTAGGTGGTTATAGAATTGGAGTGTGTAGTAAAGGTACCCCTCAAGATAAGGCCAACATGCAAAGATTAGAAGATCAGGCGAAAGATCGTATGGCT
AAACCTAGAAACATTCCTTTACCACCTTCGTTTGTCCTTTCTAGTGGGGCTATGAGTATAACTCCACCAAGAGGAAGCTAA
Protein sequenceShow/hide protein sequence
MASSSSSTSSNSGQSSTIPSIATTISSSSVEEELKPLWQYVTKNQRLNEGGGNISWQCNFCHCPKKSSYTRVRADLLGLGGYRIGVCSKGTPQDKANMQRLEDQAKDRMA
KPRNIPLPPSFVLSSGAMSITPPRGS