CuGenDBv2

Gene ID	HG10009887
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Genome location	Chr06:12931778..12938943
RNA-Seq Expression	HG10009887
Synteny	HG10009887
Gene Ontology terms	GO:0043229 - intracellular organelle (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]

1.2e-29

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

KAA0039507.1 hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]

7.1e-30

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQ+ L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR+SPRIKD APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

KAA0065297.1 hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]

4.6e-29

51.87

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK T++SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]

3.5e-29

51.87

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQ+ L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

TYK22453.1 uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]

1.2e-29

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDE0 Uncharacterized protein

3.4e-30

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQ+ L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR+SPRIKD APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

A0A5A7VDY1 Uncharacterized protein

2.2e-29

51.87

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK T++SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

A0A5A7VIA9 Uncharacterized protein

5.9e-30

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

A0A5D3CTS8 Uncharacterized protein

1.7e-29

51.87

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQ+ L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

A0A5D3DFX6 Uncharacterized protein

5.9e-30

52.41

Show/hide

Query:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK
        +EVVNQRL  KC SEKQSQE L+KN PP +SLEM++ADVD                                      E EIEDNE  EE+DN REN+SK
Subjt:  SEVVNQRLPKKCASEKQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNE--EEEDNERENRSK

Query:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS
        MVHDTSNK   VQEKAK+K M IA N+E  RPKRQ KPS K+L+N K+QK      N + +   SPK TR SPRI+D APSFDL+IS
Subjt:  MVHDTSNK---VQEKAKMKAMGIAKNVENVRPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGTGCCTCCCCGCTCATGACAGCGCTGCCTAGTGCGCGCCGCCCAGCACTCGTGTGCTTGGCGTGTGCCAAGGCCTTCCCAGTGCCTCCTTGCTATGTCCCGTCCGA
CCATGCCCGTGTATGTCCTTGTGCCCACCAACGCCCATTCCAGCGTCGTGCGTCCACCCACGCCCGTTGGTGTGTTGTGCCCTATTCGTGGCCCACATGCCTTATCGCTC
ATGCTGTCAGCCTTGCCACTCTATGGCATGTGAAGGTGTCAGCCACCCATGTACTTGACTTCACCTCAGAAGTTGTAAACCAGAGACTTCCTAAAAAATGTGCAAGTGAA
AAACAATCTCAAGAGTCCTTGGATAAGAATCATCCTCCATCATTGAGTCTAGAAATGTTAGAAGCTGATGTTGATGCTAATGTTGATAAAGCGGTTGAATATGCAACCAC
TTATGTGAAGGAGAAAAAGCATGGAGAAACTCATGATAAAGAAAAAGAAGAAACCACCACTACTGTCACTGCCATTGATGAAAATGAGATTGAAGACAATGAGGAAGAAG
AAGATAATGAACGTGAAAATAGGTCAAAGATGGTCCATGACACTTCAAACAAGGTTCAAGAAAAGGCAAAAATGAAAGCTATGGGAATAGCAAAGAACGTTGAAAATGTT
AGGCCGAAGAGACAACTTAAACCATCAAATAAAATCTTGGATAATGCAAAAGACCAAAAGATTGCAAAAGACCAGAGGAATGCAAAAGACCAAAACAAAGCTTCCCCAAA
ACAAACAAGGAATTCTCCTAGAATAAAAGATTGTGCCCCTAGTTTTGACTTGAAAATCTCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRASPLMTALPSARRPALVCLACAKAFPVPPCYVPSDHARVCPCAHQRPFQRRASTHARWCVVPYSWPTCLIAHAVSLATLWHVKVSATHVLDFTSEVVNQRLPKKCASE
KQSQESLDKNHPPSLSLEMLEADVDANVDKAVEYATTYVKEKKHGETHDKEKEETTTTVTAIDENEIEDNEEEEDNERENRSKMVHDTSNKVQEKAKMKAMGIAKNVENV
RPKRQLKPSNKILDNAKDQKIAKDQRNAKDQNKASPKQTRNSPRIKDCAPSFDLKIS

HG10009887 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome