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HG10009892 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009892
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationChr06:13095712..13096233
RNA-Seq ExpressionHG10009892
SyntenyHG10009892
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4369030.1 hypothetical protein F8388_013359 [Cannabis sativa]4.3e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP       N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+  + K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  +V
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

KAF4379869.1 hypothetical protein G4B88_012792, partial [Cannabis sativa]2.5e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G +++L +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G +
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

KAF4392199.1 hypothetical protein F8388_012655 [Cannabis sativa]2.5e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G +++L +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G +
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

KAF4396512.1 hypothetical protein F8388_005782 [Cannabis sativa]6.6e-1833.96Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

XP_030485460.1 uncharacterized protein LOC115702143 [Cannabis sativa]6.6e-1833.96Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

TrEMBL top hitse value%identityAlignment
A0A7J6GCK1 Uncharacterized protein (Fragment)1.2e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G +++L +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G +
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

A0A7J6HCI0 Uncharacterized protein1.2e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G +++L +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G +
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

A0A7J6HML3 Uncharacterized protein3.2e-1833.96Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

A0A7J6I5R5 Uncharacterized protein2.1e-1733.33Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP       N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+  + K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  +V
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

A0A803QSC8 Uncharacterized protein3.2e-1833.96Show/hide
Query:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W+PP      +N DAS ++   G GL  VIRD +G +V AA  F  G ++VL +EA A+  G Q+A    +TN  V S+SH L++A+ + +   +  G++
Subjt:  WMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV
        +++I+    K       F  R+CN VA+SLA+W+   +    W+ ++P     F+  DV
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.4e-1030.92Show/hide
Query:  RWMPPGGGEMKLNVDAS-CMSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE
        +W PP  G +K N D+     +     G  IR+  G++V   N   +     L +EAL  L   Q+ +  GL   W ES+S  LV  I N     S +G 
Subjt:  RWMPPGGGEMKLNVDAS-CMSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE

Query:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWL
        ++ +IR WM K+    L F+ R  N  A +LA          Q     P WL
Subjt:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWL

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0624.39Show/hide
Query:  RWMPPGGGEMKLNVDASC-MSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE
        +W  P    +K N DA   + N+      +IR+  G      +   +     L +E  ALL   Q  +  G     +E +   L   +   S   + +  
Subjt:  RWMPPGGGEMKLNVDASC-MSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE

Query:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN
        +L++IR W  K +     F+ R  N VAH LA+    +      S  +P WL        H+CN
Subjt:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN

AT3G09510.1 Ribonuclease H-like superfamily protein3.9e-0828.83Show/hide
Query:  WMPPGGGEMKLNVDASC-MSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI
        W  P    +K N DA   +  +    G +IR+  G  +   +       N L +E  ALL   Q  +  G T  ++E +   L+  I   S   SS+   
Subjt:  WMPPGGGEMKLNVDASC-MSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEI

Query:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN
        LE+I  W  K       FI R  N +AH LA++  T       S  +P W      LD +FCN
Subjt:  LEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0626.06Show/hide
Query:  ERWMPPGGGEMKLNVDAS-CMSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIG
        ++W  PG   +K N D S        GL  +IR+SQG  +       +G   +  +E  AL++  Q A+D+G      E ++  + R I+N       + 
Subjt:  ERWMPPGGGEMKLNVDAS-CMSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIG

Query:  EILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN
          LE I+ W          F  R  N     LA+ A  N  +       P +L  FV  D    N
Subjt:  EILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0927.95Show/hide
Query:  RWMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE
        +W PPG  ++K N DAS    N   GLG ++R+SQG V++      +G +    +E   L++  Q ++  G      E ++  + R I N       +  
Subjt:  RWMPPGGGEMKLNVDASCMS-NVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGE

Query:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIV--VPGWLGHFVELD
         L+ I+ W+         F  R  NG A  LA+ A   + + QWS+    P +L  +V  D
Subjt:  ILEEIRDWMGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIV--VPGWLGHFVELD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGAGGTGGATGCCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATGCTTCATGCATGTCTAATGTGGGAATGGGGTTGGGGGTTGTTATTCGTGACTCTCA
AGGAAATGTGGTGAAAGCTGCAAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTTCTGAAGCGTTAGCGCTCTTGTTTGGAACTCAAATGGCCTTTGATATGGGTC
TAACTAATTTTTGGGTAGAATCTAATTCTCATAAATTAGTTAGAGCTATTCAAAATTATTCTATTCAAAAGTCTTCAATTGGTGAAATTCTAGAAGAGATTAGAGACTGG
ATGGGTAAAATTAATGTTAGGGGTCTCTTTTTTATTCTGCGTGCTTGTAATGGGGTTGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGCCGATGGTCAATGGTC
TATTGTGGTTCCTGGATGGTTGGGTCATTTTGTTGAGCTTGATGTTCATTTTTGTAATCCGCTAGACGGTATTTATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGAGGTGGATGCCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATGCTTCATGCATGTCTAATGTGGGAATGGGGTTGGGGGTTGTTATTCGTGACTCTCA
AGGAAATGTGGTGAAAGCTGCAAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTTCTGAAGCGTTAGCGCTCTTGTTTGGAACTCAAATGGCCTTTGATATGGGTC
TAACTAATTTTTGGGTAGAATCTAATTCTCATAAATTAGTTAGAGCTATTCAAAATTATTCTATTCAAAAGTCTTCAATTGGTGAAATTCTAGAAGAGATTAGAGACTGG
ATGGGTAAAATTAATGTTAGGGGTCTCTTTTTTATTCTGCGTGCTTGTAATGGGGTTGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGCCGATGGTCAATGGTC
TATTGTGGTTCCTGGATGGTTGGGTCATTTTGTTGAGCTTGATGTTCATTTTTGTAATCCGCTAGACGGTATTTATGTTTAA
Protein sequenceShow/hide protein sequence
MVERWMPPGGGEMKLNVDASCMSNVGMGLGVVIRDSQGNVVKAANKFEEGVVNVLASEALALLFGTQMAFDMGLTNFWVESNSHKLVRAIQNYSIQKSSIGEILEEIRDW
MGKINVRGLFFILRACNGVAHSLARWASTNRADGQWSIVVPGWLGHFVELDVHFCNPLDGIYV