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HG10009912 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009912
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTubulin alpha-1B chain
Genome locationChr06:13772635..13779079
RNA-Seq ExpressionHG10009912
SyntenyHG10009912
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH09729.1 hypothetical protein Prudu_022311 [Prunus dulcis]3.6e-2851.54Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        LGT+  I+L   S++L   REL+FL  LTH+PVHK  L IH++K VVN+GE L N   VGDHA++ LNL ++ +W NS WLVVDT LES  APV KL+G 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM
            G + S+HIL ++I+++H+ A HVF++
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM

GER37418.1 P-loop containing nucleoside triphosphatehydrolases superfamily protein, partial [Striga asiatica]2.8e-2855.38Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        L TNLLI+L   S++LP LREL FL  LTHVPVHK PL IH++K VVN  E L NT  V  HA+  L+L Q+    +S WLVVD  LES  APV+KL+G 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM
        F F   H  ++ILW+HI+S+H+ A HV SM
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM

GER50482.1 complement C3 [Striga asiatica]7.7e-3150Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        L +NLLI+L   S++LP LRELTFL  LTH+P+HK  L +H+IK VVN  E L N   V +HA++ L+L ++  W +SR LVVD TLE+  APV+KLDG 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESMK
          F G H  V+I  +HI+    T    F   GSHL I+DEGS  +L           AFSAEIT AY ESMK
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESMK

GIL73334.1 hypothetical protein Vretifemale_3527, partial [Volvox reticuliferus]5.7e-2650.77Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        LG NLL VL   S++L  LRELT L  LT +PVH+  L IH+I+ VV A EDL N+  VGDHA  +L+L QI  W+N   LVVD  L++  APV++L+G 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM
         R  G H  V +LW+HI+++HQ AGHV ++
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM

OQR92756.1 hypothetical protein ACHHYP_03229 [Achlya hypogyna]2.3e-2746.78Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        LG +L +VL   SKVL  LREL F   L  VPVH+  L +H+++ V++A ED  ++  VGDH  ++L+  ++ A  N     +D  LE+  APVN+L+  
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESM
         R  G H SV +L + I++    A       GSHLAI+D+GS   LVISATESCSWYAFSAEIT AY ES+
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESM

TrEMBL top hitse value%identityAlignment
A0A1V9Z439 J domain-containing protein1.1e-2746.78Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        LG +L +VL   SKVL  LREL F   L  VPVH+  L +H+++ V++A ED  ++  VGDH  ++L+  ++ A  N     +D  LE+  APVN+L+  
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESM
         R  G H SV +L + I++    A       GSHLAI+D+GS   LVISATESCSWYAFSAEIT AY ES+
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESM

A0A4W2I559 Tubulin alpha-1B chain4.0e-2550.76Show/hide
Query:  RNLGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLD
        R +G+NLLI+L   S VL  LR+L+FL  LTHVPV+K  L IH++K VV A   L N+CGV  HA++SL   Q+ A Y+S  LVV+  LE+  APV+KLD
Subjt:  RNLGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLD

Query:  GLFRFYGCHRSVHILWNHISSIHQTAGHVFSM
        G     G + S+ I  NHI+++ Q AGHVF M
Subjt:  GLFRFYGCHRSVHILWNHISSIHQTAGHVFSM

A0A4Y1RZ79 Uncharacterized protein1.7e-2851.54Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        LGT+  I+L   S++L   REL+FL  LTH+PVHK  L IH++K VVN+GE L N   VGDHA++ LNL ++ +W NS WLVVDT LES  APV KL+G 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM
            G + S+HIL ++I+++H+ A HVF++
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM

A0A5A7PXT3 P-loop containing nucleoside triphosphatehydrolases superfamily protein (Fragment)1.3e-2855.38Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        L TNLLI+L   S++LP LREL FL  LTHVPVHK PL IH++K VVN  E L NT  V  HA+  L+L Q+    +S WLVVD  LES  APV+KL+G 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM
        F F   H  ++ILW+HI+S+H+ A HV SM
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSM

A0A5A7QZH1 Complement C33.7e-3150Show/hide
Query:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL
        L +NLLI+L   S++LP LRELTFL  LTH+P+HK  L +H+IK VVN  E L N   V +HA++ L+L ++  W +SR LVVD TLE+  APV+KLDG 
Subjt:  LGTNLLIVL---SKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTTLESCWAPVNKLDGL

Query:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESMK
          F G H  V+I  +HI+    T    F   GSHL I+DEGS  +L           AFSAEIT AY ESMK
Subjt:  FRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCATCATATTCATTGAAAGAAGAAGAAAGAGCCAAAGGAAACAGCAAACATGATGAAAGACAGATTGCAAGAAACCTCGGCACCAACCTCCTCATAGTCCTCAG
CAAGGTCCTCCCTAGCCTCAGAGAACTCACCTTTCTTCCATACCTCACCCACGTACCAGTGCACAAAAGCCCTCTTTGCATACATGAGATCAAATTTGTGGTCAATGCGG
GAGAAGACCTCTGCAACACTTGTGGAGTTGGAGACCATGCATACAACTCTCTAAACCTTAGCCAAATTCCCGCCTGGTACAATAGTAGGTGGCTGGTAGTTGATACCACA
CTTGAATCCTGTTGGGCACCAGTCAACAAATTGGATGGTTTGTTTCGTTTTTATGGTTGCCACCGCAGCGTTCACATCCTTTGGAACCACATCTCCTCTATACATCAAAC
AGCAGGCCATGTATTTTCCATGGGGGGGTCACACTTGGCCATCATGGATGAAGGCTCAAATGTACTGTTGGTGATCTCTGCAACAGAGAGTTGCTCGTGGTACGCCTTCT
CCGCTGAAATCACAAGAGCATATGTTGAAAGCATGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCATCATATTCATTGAAAGAAGAAGAAAGAGCCAAAGGAAACAGCAAACATGATGAAAGACAGATTGCAAGAAACCTCGGCACCAACCTCCTCATAGTCCTCAG
CAAGGTCCTCCCTAGCCTCAGAGAACTCACCTTTCTTCCATACCTCACCCACGTACCAGTGCACAAAAGCCCTCTTTGCATACATGAGATCAAATTTGTGGTCAATGCGG
GAGAAGACCTCTGCAACACTTGTGGAGTTGGAGACCATGCATACAACTCTCTAAACCTTAGCCAAATTCCCGCCTGGTACAATAGTAGGTGGCTGGTAGTTGATACCACA
CTTGAATCCTGTTGGGCACCAGTCAACAAATTGGATGGTTTGTTTCGTTTTTATGGTTGCCACCGCAGCGTTCACATCCTTTGGAACCACATCTCCTCTATACATCAAAC
AGCAGGCCATGTATTTTCCATGGGGGGGTCACACTTGGCCATCATGGATGAAGGCTCAAATGTACTGTTGGTGATCTCTGCAACAGAGAGTTGCTCGTGGTACGCCTTCT
CCGCTGAAATCACAAGAGCATATGTTGAAAGCATGAAGTGA
Protein sequenceShow/hide protein sequence
MKASYSLKEEERAKGNSKHDERQIARNLGTNLLIVLSKVLPSLRELTFLPYLTHVPVHKSPLCIHEIKFVVNAGEDLCNTCGVGDHAYNSLNLSQIPAWYNSRWLVVDTT
LESCWAPVNKLDGLFRFYGCHRSVHILWNHISSIHQTAGHVFSMGGSHLAIMDEGSNVLLVISATESCSWYAFSAEITRAYVESMK