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HG10009917 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009917
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr06:13996697..13997092
RNA-Seq ExpressionHG10009917
SyntenyHG10009917
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]3.5e-4369.11Show/hide
Query:  DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSI
        +G++QFIVKL++  CS RVWD EEIPCAHAL V+RMLNLD+YSYVS++YY   LSETY  C++PVG H DWRV D VMK LPP+ +RQAGRP K RI S+
Subjt:  DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSI

Query:  GEFKSSSKCSRCNRKGHNSRTYK
         EF SS+KCS CNRKGHNSRT K
Subjt:  GEFKSSSKCSRCNRKGHNSRTYK

XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]8.2e-3762.6Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        M GDKQ IVKL+LGSCS RVWDF EIPC+HAL V+ MLNL+SYSYVS YY+S+ L  TY   V P+GVH +WR+ +D + ALPPI +R  GRPK  R+ S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ
        IGE  SSS +CS C+ KGHNSRT KL   +Q
Subjt:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ

XP_038896605.1 uncharacterized protein LOC120084863 [Benincasa hispida]1.0e-4267.18Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        MDGDKQF+VKL+  SCS +VWDFEEIPC+H L V+R+LN+D YSY+S YYYS  LS TY  CVRPVGVH +WRV DD ++ALPPI +  A RPKK RI S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ
        +GE KSSS +CSRC+ KGHNSRT KL   SQ
Subjt:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ

XP_038902433.1 uncharacterized protein LOC120089079 [Benincasa hispida]2.4e-3676.53Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRI
        MDG KQFIVKL+LGS SFRVWDFEEIPCAHAL V+RMLNLD+ SYV+ +YY R LS TYKCC RPV VHLDWR +DDVMK LP IV+RQ GRP+K RI
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRI

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]2.2e-4267.94Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        MDGDKQF+VKL+LGSCS RVWDFEEI C+HAL ++ +LN+D YSYVS YYYS  LS TY  CVRP+GVH +WRV DD ++ALPPI +R AG PKK RI S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ
          E KSSS +CSRC+ KGHNSRT KL   SQ
Subjt:  IGEFKSSS-KCSRCNRKGHNSRTYKLEPFSQ

TrEMBL top hitse value%identityAlignment
A0A5A7TVL2 ZnF_PMZ domain-containing protein2.4e-3458.27Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        +DG K F+VKL+  SCS   WD EEIPCA AL VIR LNL+ Y++VS+YYY+ +LS TY   VRP+G H DW V +     LPP+ +R AGRP+K RI S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSSKCSRCNRKGHNSRTYKLEP
        IGE   SSKCSRC R GHN RT   EP
Subjt:  IGEFKSSSKCSRCNRKGHNSRTYKLEP

A0A5D3BD68 SWIM-type domain-containing protein1.4e-3458.27Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        +DG K F+VKL+  SCS   WD EEIPCAHAL VIR LNL+ Y++VS+YYY+ +LS TY   VRP+G H DW V       LPP+ +R AGRP+K RI S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSSKCSRCNRKGHNSRTYKLEP
        IGE   SSKCSRC R  HN RT + EP
Subjt:  IGEFKSSSKCSRCNRKGHNSRTYKLEP

A0A5D3BEQ2 SWIM-type domain-containing protein7.0e-3456.69Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        +DG K F+VKL+  SCS   WD EEI CAHAL VIR LNL+ Y++VS+YYY+ +LS TY   VRP+G H DW V +     LPP+ +R AGRP+K +I S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSSKCSRCNRKGHNSRTYKLEP
        IG+   SSKCSRC R GHN RT + EP
Subjt:  IGEFKSSSKCSRCNRKGHNSRTYKLEP

A0A5D3BVP4 SWIM-type domain-containing protein1.3e-3559.06Show/hide
Query:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS
        +DG K F+VKL+  SCS   WD EEIPCAHAL VIR LNL+ Y++VS+YYY+ +LS TY   VRP+G H DW V +     LPP+ +R AGRP+K RI S
Subjt:  MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVS

Query:  IGEFKSSSKCSRCNRKGHNSRTYKLEP
        IGE   SSKCSRC R GHN RT + EP
Subjt:  IGEFKSSSKCSRCNRKGHNSRTYKLEP

A0A5D3C7L7 Uncharacterized protein1.7e-4369.11Show/hide
Query:  DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSI
        +G++QFIVKL++  CS RVWD EEIPCAHAL V+RMLNLD+YSYVS++YY   LSETY  C++PVG H DWRV D VMK LPP+ +RQAGRP K RI S+
Subjt:  DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSI

Query:  GEFKSSSKCSRCNRKGHNSRTYK
         EF SS+KCS CNRKGHNSRT K
Subjt:  GEFKSSSKCSRCNRKGHNSRTYK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase8.0e-0630.12Show/hide
Query:  KQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQ
        +++IV+L++ +C+ R +   + PC HALAV   L ++   YV + Y      +TY     PV     W  +  V    PP  Q
Subjt:  KQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGACAAACAATTCATAGTGAAGTTAGACTTGGGATCTTGCAGTTTTCGAGTATGGGATTTTGAGGAAATTCCATGTGCACATGCACTTGCTGTTATTCGGAT
GCTTAATTTGGATAGTTATTCTTATGTATCTAAGTATTATTATTCAAGAATATTGTCAGAAACATATAAATGTTGTGTTCGACCAGTTGGAGTTCATTTAGATTGGAGGG
TTGAAGATGATGTCATGAAAGCATTACCTCCTATTGTTCAACGTCAAGCTGGAAGACCTAAAAAACACAGGATTGTATCTATTGGTGAATTTAAAAGTTCATCAAAATGT
AGTCGTTGTAATCGCAAAGGTCACAATAGTAGGACTTACAAACTTGAACCATTTAGTCAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGACAAACAATTCATAGTGAAGTTAGACTTGGGATCTTGCAGTTTTCGAGTATGGGATTTTGAGGAAATTCCATGTGCACATGCACTTGCTGTTATTCGGAT
GCTTAATTTGGATAGTTATTCTTATGTATCTAAGTATTATTATTCAAGAATATTGTCAGAAACATATAAATGTTGTGTTCGACCAGTTGGAGTTCATTTAGATTGGAGGG
TTGAAGATGATGTCATGAAAGCATTACCTCCTATTGTTCAACGTCAAGCTGGAAGACCTAAAAAACACAGGATTGTATCTATTGGTGAATTTAAAAGTTCATCAAAATGT
AGTCGTTGTAATCGCAAAGGTCACAATAGTAGGACTTACAAACTTGAACCATTTAGTCAGATGTGA
Protein sequenceShow/hide protein sequence
MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKC
SRCNRKGHNSRTYKLEPFSQM