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HG10009918 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009918
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCharged multivesicular body protein 1b
Genome locationChr06:14090159..14095670
RNA-Seq ExpressionHG10009918
SyntenyHG10009918
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0032509 - endosome transport via multivesicular body sorting pathway (biological process)
GO:0045324 - late endosome to vacuole transport (biological process)
GO:0000815 - ESCRT III complex (cellular component)
GO:0005771 - multivesicular body (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146833.1 ESCRT-related protein CHMP1B [Cucumis sativus]1.5e-0880.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

XP_008382778.3 ESCRT-related protein CHMP1B-like [Malus domestica]1.2e-0878.26Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        +SRKCE E+K+EKLKIKKAMEKGN+DG+RIY +NAI+KHTE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

XP_009396527.1 PREDICTED: ESCRT-related protein CHMP1-like [Musa acuminata subsp. malaccensis]6.8e-0978.26Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLK+KKA+EKGNMDGARIY +NAI+K TEHMNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

XP_022148096.1 ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]1.5e-0880.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

XP_022949550.1 ESCRT-related protein CHMP1B-like [Cucurbita moschata]1.5e-0880.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

TrEMBL top hitse value%identityAlignment
A0A0A0LIG8 Uncharacterized protein7.4e-0980.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

A0A5A7V1A1 ESCRT-related protein CHMP1B7.4e-0980.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

A0A6J1D453 ESCRT-related protein CHMP1B-like isoform X27.4e-0980.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

A0A6J1KC50 ESCRT-related protein CHMP1B-like7.4e-0980.43Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLKIKKAMEKGNMDGARIY +NAI+K TE MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

M0RYJ5 Uncharacterized protein3.3e-0978.26Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+KSEKLK+KKA+EKGNMDGARIY +NAI+K TEHMNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

SwissProt top hitse value%identityAlignment
O96552 Charged multivesicular body protein 13.3e-0652Show/hide
Query:  QICSRSRKCEE-KKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        Q+  +S+K E+ +K++K+K+KKA+E+GNMDGARIY +NAI++  + +NYL
Subjt:  QICSRSRKCEE-KKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

Q7ZVB1 Charged multivesicular body protein 1b8.1e-0551.11Show/hide
Query:  SRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        S+KC+ E+K+EK+K+KKA++KGNM+ ARI+ +NAI++  + +N+L
Subjt:  SRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

Q84VG1 ESCRT-related protein CHMP15.8e-1173.91Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E+K +KLK+KKA+EKGNMDGARIY +NAI+K TEHMNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

Q8LE58 ESCRT-related protein CHMP1A4.9e-1071.74Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E++SEKLK+KKA+EKGNMDGARIY +NAI+K +E MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

Q9SSM4 ESCRT-related protein CHMP1B2.2e-1073.91Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        +SRKCE E+K+EKLK+KKA+EKGNMDGARIY +NAI+K +E MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

Arabidopsis top hitse value%identityAlignment
AT1G17730.1 vacuolar protein sorting 46.13.5e-1171.74Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        ++RKCE E++SEKLK+KKA+EKGNMDGARIY +NAI+K +E MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL

AT1G73030.1 SNF7 family protein1.6e-1173.91Show/hide
Query:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL
        +SRKCE E+K+EKLK+KKA+EKGNMDGARIY +NAI+K +E MNYL
Subjt:  RSRKCE-EKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGGGGGAACGTGTTGGTGAAATTGGAGGTGTCATGTTGGAGGGCAGCTGGTGGAGGCTGGCCTGTAAAAGCACCCACGCTTGTGAGACTTCGGCTTTCGTCATC
TCACCAAGCGTTAACTTCGGACTACACAAAGTTTAGATCGAGGTTCAGATCCGCTCGTCGGCGTCGTGCAGATCCGTTTATTAGCGTCAGATTCGTGCTGACTTCAGATC
TGTGTCGATCCATTACTCGCGTAGTCAGATCCGCTCGTCGGCGTTGTGACTTAGCTTTATTCGCTAGGTTTGTGTTCGTTCGTCAGATCTACTGTTCTTCAAGCCCGATC
TTAGCTCAAATCTGTTCAAGATCAAGAAAATGCGAGGAAAAAAAATCTGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACGAATTTACAC
TAAGAATGCAATTCAGAAGCATACGGAACATATGAACTACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGGGGGAACGTGTTGGTGAAATTGGAGGTGTCATGTTGGAGGGCAGCTGGTGGAGGCTGGCCTGTAAAAGCACCCACGCTTGTGAGACTTCGGCTTTCGTCATC
TCACCAAGCGTTAACTTCGGACTACACAAAGTTTAGATCGAGGTTCAGATCCGCTCGTCGGCGTCGTGCAGATCCGTTTATTAGCGTCAGATTCGTGCTGACTTCAGATC
TGTGTCGATCCATTACTCGCGTAGTCAGATCCGCTCGTCGGCGTTGTGACTTAGCTTTATTCGCTAGGTTTGTGTTCGTTCGTCAGATCTACTGTTCTTCAAGCCCGATC
TTAGCTCAAATCTGTTCAAGATCAAGAAAATGCGAGGAAAAAAAATCTGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACGAATTTACAC
TAAGAATGCAATTCAGAAGCATACGGAACATATGAACTACCTCTGA
Protein sequenceShow/hide protein sequence
MPRGNVLVKLEVSCWRAAGGGWPVKAPTLVRLRLSSSHQALTSDYTKFRSRFRSARRRRADPFISVRFVLTSDLCRSITRVVRSARRRCDLALFARFVFVRQIYCSSSPI
LAQICSRSRKCEEKKSEKLKIKKAMEKGNMDGARIYTKNAIQKHTEHMNYL