; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10009950 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10009950
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr06:15250123..15255733
RNA-Seq ExpressionHG10009950
SyntenyHG10009950
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR025558 - Domain of unknown function DUF4283
IPR036397 - Ribonuclease H superfamily
IPR040256 - Uncharacterized protein At4g02000-like
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG60826.1 hypothetical protein EZV62_012189 [Acer yangbiense]2.8e-1835.57Show/hide
Query:  LVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYCR
        +V K+ S K I+ E FR  MPKIWR   ++IE V  N++L  FR  KD+  T   G W F+N LL  +++       ++ F    FW+ +HN P     +
Subjt:  LVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYCR

Query:  KYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL
        +  M L  +IG  + +D      C+G  LR+RV+I+ ++PLKR + + L
Subjt:  KYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]7.3e-1942.57Show/hide
Query:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF
        +F + +DE    +  +   LVCK+L++K I  E+F+  MP+IW N+ V+IE VG+NL+LCKF+ ++DK    +NG WFF+ ++++ +E + NC+F+EL+F
Subjt:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF

Query:  R
        R
Subjt:  R

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]7.3e-1942.57Show/hide
Query:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF
        +F + +DE    +  +   LVCK+L++K I  E+F+  MP+IW N+ V+IE VG+NL+LCKF+ ++DK    +NG WFF+ ++++ +E + NC+F+EL+F
Subjt:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF

Query:  R
        R
Subjt:  R

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.9e-1936.14Show/hide
Query:  LDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRF
        +D D     E G    LV K+L+ + I  ++    +   W+    + +E +G+NL+L  F    D       G WFF+ AL+V  +  ++ + SEL+F  
Subjt:  LDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRF

Query:  VSFWIHLHNVPSSFYCRKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL
        V+FWIHL ++P S+  +  A+ L N IG F  VD ++K   WG +LRIRV I+  KPL+RGI I +
Subjt:  VSFWIHLHNVPSSFYCRKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]9.5e-1955.45Show/hide
Query:  VLRDHLGRVRLVGLLFIPRCSEVKTLEVMAICYGLESVSFLNLPHILVESDCL-EVVRLLNDVETNISEVSFFIDEAKCRGNALGVVSFSHVRQSQNELA
        V  DHL RV + GL F+ RC +V  LE +AIC+GLE +S +++ +I+VESDCL EV+ LLND   ++SEVSF  +EAK RG  LGV+SFSHVR+ +N LA
Subjt:  VLRDHLGRVRLVGLLFIPRCSEVKTLEVMAICYGLESVSFLNLPHILVESDCL-EVVRLLNDVETNISEVSFFIDEAKCRGNALGVVSFSHVRQSQNELA

Query:  H
        +
Subjt:  H

TrEMBL top hitse value%identityAlignment
A0A5C7H9Y2 CCHC-type domain-containing protein2.3e-1833.96Show/hide
Query:  LVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYC
        L+ K ++ K I+ E F+  +  IW+    V +E +G N++  +F+   D++   + G W F+  LLV  E   +   ++LQFR+V FWI LHN+P +   
Subjt:  LVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYC

Query:  RKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKLGTMSERDEV
        R+  + L  L+G+ +++D+ +   C G  +RIRV I+   PLKRG+ + LG   + +EV
Subjt:  RKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKLGTMSERDEV

A0A5C7HWW6 Glucan endo-1,3-beta-D-glucosidase1.3e-1835.57Show/hide
Query:  LVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYCR
        +V K+ S K I+ E FR  MPKIWR   ++IE V  N++L  FR  KD+  T   G W F+N LL  +++       ++ F    FW+ +HN P     +
Subjt:  LVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLHNVPSSFYCR

Query:  KYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL
        +  M L  +IG  + +D      C+G  LR+RV+I+ ++PLKR + + L
Subjt:  KYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.5e-1942.57Show/hide
Query:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF
        +F + +DE    +  +   LVCK+L++K I  E+F+  MP+IW N+ V+IE VG+NL+LCKF+ ++DK    +NG WFF+ ++++ +E + NC+F+EL+F
Subjt:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF

Query:  R
        R
Subjt:  R

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.5e-1942.57Show/hide
Query:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF
        +F + +DE    +  +   LVCK+L++K I  E+F+  MP+IW N+ V+IE VG+NL+LCKF+ ++DK    +NG WFF+ ++++ +E + NC+F+EL+F
Subjt:  MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQF

Query:  R
        R
Subjt:  R

A0A6J1DU55 uncharacterized protein LOC1110231359.3e-2036.14Show/hide
Query:  LDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRF
        +D D     E G    LV K+L+ + I  ++    +   W+    + +E +G+NL+L  F    D       G WFF+ AL+V  +  ++ + SEL+F  
Subjt:  LDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWR-NIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRF

Query:  VSFWIHLHNVPSSFYCRKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL
        V+FWIHL ++P S+  +  A+ L N IG F  VD ++K   WG +LRIRV I+  KPL+RGI I +
Subjt:  VSFWIHLHNVPSSFYCRKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTTTAGATGATGATGAGTGTGCAAAGTTAGAGACTGGATCTCCAAACTATTTGGTGTGCAAAATTCTATCAATCAAAGAGATTCATGTTGAGATTTTCAGAGA
GAAGATGCCAAAGATATGGAGAAACATCCCGGTTCAGATTGAGTGGGTGGGCAGGAATCTGTACCTGTGCAAATTTAGATTTTTGAAAGATAAACAATGGACCCAAGACA
ATGGTTCATGGTTCTTTGAGAATGCCTTACTAGTGTTTGACGAATTGAAGACCAACTGTAGCTTCTCCGAACTACAATTCAGGTTTGTGTCCTTCTGGATTCATTTACAT
AATGTCCCTTCTAGTTTTTATTGCAGGAAATATGCTATGAGTCTTGAAAATCTTATAGGCAGGTTTGAAAAAGTTGATTCGGATAAGAAGAGTAGATGTTGGGGTTGTAC
CCTTCGAATACGAGTTTCGATTAACACTGATAAACCTTTAAAAAGGGGTATTCTAATCAAATTGGGTACCATGTCAGAGAGAGATGAGGTGGAACCTCGATTTGGTCCTG
AACTCCATGAGCAAAACTTGATTCGAAAGAAAAATGTAGAACCACAAGCTTTTGATTCTGAGAAGACTTCACCAAGGGTAGGAGAAGGTCGTGGTAGAGGTAGATCTGGA
AATACCATTGCTAATAGAAGTGTCGAGATTAAGATTCATCGAGATTGTGAGGAGGAAGGTAATGTGGAAGATTTTTCGAATAGAGATGAAGATGGAAAGGAGAAGGAGAT
GGCAGTGCCTGCGGTTGAAAGAAACGAGAACACAGTGGCGGCTACCCAAACGGTAGCTACATCGAGGATGCCAGAGACGGCAGCGATGAACGGGACAAATTTACTTGGTG
TGATCGTCGTTGGAGTGGAAACCCGATATGAGAAAGACTTGACAGATATCTGGAATGTTTGGGCAGTTCAAGGAATTGTTGATGTGACTGACTTTTGCAAGAAGACAATA
CGTTGCCTTGAGGAATTGGTGCTTCGCGATCATCTCGGACGAGTTAGGCTTGTTGGTCTGCTTTTTATTCCTCGGTGTAGCGAAGTGAAGACTCTTGAGGTGATGGCTAT
TTGTTATGGGTTAGAGAGCGTCTCTTTTTTAAACCTTCCTCATATTTTGGTGGAGTCTGACTGTCTTGAGGTTGTTCGGTTGCTTAATGATGTGGAGACGAATATCTCCG
AAGTGTCTTTTTTCATTGATGAGGCCAAATGTAGGGGAAATGCGCTTGGTGTTGTCTCTTTTTCTCATGTTAGGCAGAGTCAGAACGAGCTTGCGCACCGTGCGGCGCAT
AAGGCGTTGGAGGAGCGTCATTCTTCCTTGATTCAATCTCCTTACCCTGAGTGGTTGTCGCGACTTGCTTCTTTGGATGTTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCTTTAGATGATGATGAGTGTGCAAAGTTAGAGACTGGATCTCCAAACTATTTGGTGTGCAAAATTCTATCAATCAAAGAGATTCATGTTGAGATTTTCAGAGA
GAAGATGCCAAAGATATGGAGAAACATCCCGGTTCAGATTGAGTGGGTGGGCAGGAATCTGTACCTGTGCAAATTTAGATTTTTGAAAGATAAACAATGGACCCAAGACA
ATGGTTCATGGTTCTTTGAGAATGCCTTACTAGTGTTTGACGAATTGAAGACCAACTGTAGCTTCTCCGAACTACAATTCAGGTTTGTGTCCTTCTGGATTCATTTACAT
AATGTCCCTTCTAGTTTTTATTGCAGGAAATATGCTATGAGTCTTGAAAATCTTATAGGCAGGTTTGAAAAAGTTGATTCGGATAAGAAGAGTAGATGTTGGGGTTGTAC
CCTTCGAATACGAGTTTCGATTAACACTGATAAACCTTTAAAAAGGGGTATTCTAATCAAATTGGGTACCATGTCAGAGAGAGATGAGGTGGAACCTCGATTTGGTCCTG
AACTCCATGAGCAAAACTTGATTCGAAAGAAAAATGTAGAACCACAAGCTTTTGATTCTGAGAAGACTTCACCAAGGGTAGGAGAAGGTCGTGGTAGAGGTAGATCTGGA
AATACCATTGCTAATAGAAGTGTCGAGATTAAGATTCATCGAGATTGTGAGGAGGAAGGTAATGTGGAAGATTTTTCGAATAGAGATGAAGATGGAAAGGAGAAGGAGAT
GGCAGTGCCTGCGGTTGAAAGAAACGAGAACACAGTGGCGGCTACCCAAACGGTAGCTACATCGAGGATGCCAGAGACGGCAGCGATGAACGGGACAAATTTACTTGGTG
TGATCGTCGTTGGAGTGGAAACCCGATATGAGAAAGACTTGACAGATATCTGGAATGTTTGGGCAGTTCAAGGAATTGTTGATGTGACTGACTTTTGCAAGAAGACAATA
CGTTGCCTTGAGGAATTGGTGCTTCGCGATCATCTCGGACGAGTTAGGCTTGTTGGTCTGCTTTTTATTCCTCGGTGTAGCGAAGTGAAGACTCTTGAGGTGATGGCTAT
TTGTTATGGGTTAGAGAGCGTCTCTTTTTTAAACCTTCCTCATATTTTGGTGGAGTCTGACTGTCTTGAGGTTGTTCGGTTGCTTAATGATGTGGAGACGAATATCTCCG
AAGTGTCTTTTTTCATTGATGAGGCCAAATGTAGGGGAAATGCGCTTGGTGTTGTCTCTTTTTCTCATGTTAGGCAGAGTCAGAACGAGCTTGCGCACCGTGCGGCGCAT
AAGGCGTTGGAGGAGCGTCATTCTTCCTTGATTCAATCTCCTTACCCTGAGTGGTTGTCGCGACTTGCTTCTTTGGATGTTATGTAG
Protein sequenceShow/hide protein sequence
MFSLDDDECAKLETGSPNYLVCKILSIKEIHVEIFREKMPKIWRNIPVQIEWVGRNLYLCKFRFLKDKQWTQDNGSWFFENALLVFDELKTNCSFSELQFRFVSFWIHLH
NVPSSFYCRKYAMSLENLIGRFEKVDSDKKSRCWGCTLRIRVSINTDKPLKRGILIKLGTMSERDEVEPRFGPELHEQNLIRKKNVEPQAFDSEKTSPRVGEGRGRGRSG
NTIANRSVEIKIHRDCEEEGNVEDFSNRDEDGKEKEMAVPAVERNENTVAATQTVATSRMPETAAMNGTNLLGVIVVGVETRYEKDLTDIWNVWAVQGIVDVTDFCKKTI
RCLEELVLRDHLGRVRLVGLLFIPRCSEVKTLEVMAICYGLESVSFLNLPHILVESDCLEVVRLLNDVETNISEVSFFIDEAKCRGNALGVVSFSHVRQSQNELAHRAAH
KALEERHSSLIQSPYPEWLSRLASLDVM