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HG10010036 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010036
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:17361786..17363332
RNA-Seq ExpressionHG10010036
SyntenyHG10010036
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7840958.1 reverse transcriptase [Senna tora]3.9e-0536.94Show/hide
Query:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRK-IYGAFASITFQHVSRTHNFAAHSLVKLG-SSGSSALWFCQAP
        +SL AE +AI+E L L +RL    +++ +DSL+AV++I   E    +  +T++ I K     F+ +   HV R  N  A  L KL  SS S  ++F + P
Subjt:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRK-IYGAFASITFQHVSRTHNFAAHSLVKLG-SSGSSALWFCQAP

Query:  PGISSFYLNDL
        P ISS +  DL
Subjt:  PGISSFYLNDL
VDD60306.1 unnamed protein product [Brassica oleracea]1.1e-0441.11Show/hide
Query:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        +C  S  S L AEA A+   + +   LE S L VLSD+L+ +  I+G+ +A+ +    V DIR I   FASI+F H+SR+ N  A +L K
Subjt:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
XP_013658645.1 uncharacterized protein LOC106363457 [Brassica napus]1.1e-0441.11Show/hide
Query:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        +C  S  S L AEA A+   + +   LE S L VLSD+L+ +  I+G+ +A+ +    V DIR I   FASI+F H+SR+ N  A +L K
Subjt:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
XP_013703259.1 uncharacterized protein LOC106407027 [Brassica napus]1.1e-0441.11Show/hide
Query:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        +C  S  S L AEA A+   + +   LE S L VLSD+L+ +  I+G+ +A+ +    V DIR I   FASI+F H+SR+ N  A +L K
Subjt:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
XP_013739634.1 uncharacterized protein LOC106442499 [Brassica napus]1.1e-0441.11Show/hide
Query:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        +C  S  S L AEA A+   + +   LE S L VLSD+L+ +  I+G+ +A+ +    V DIR I   FASI+F H+SR+ N  A +L K
Subjt:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
TrEMBL top hitse value%identityAlignment
A0A3P6GKF1 RNase H domain-containing protein5.5e-0541.11Show/hide
Query:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        +C  S  S L AEA A+   + +   LE S L VLSD+L+ +  I+G+ +A+ +    V DIR I   FASI+F H+SR+ N  A +L K
Subjt:  VCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
A0A3P6GLN9 RNase H domain-containing protein2.7e-0444.05Show/hide
Query:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMI-NGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
        S L AEA  I   L +   LE S L VLSDSL+    I + ++  E+ G   V DIR I   FA+I+F HVS++ NF A  L K
Subjt:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMI-NGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein1.2e-0441.18Show/hide
Query:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMIN-GLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVKL
        S L AEA+AI   +    +LE S LLVLSDS S V  +N  +   E+ G   +++IR I   F SI+FQ + R  N  A +  KL
Subjt:  SSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMIN-GLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGTAATCTTCAAGCCAAATTGATGTTAGTTGATGTTTGCAGAGTCTCCTCTTTAAGCTCTTTGTGCGCTGAAGCTTATGCCATTTATGAGAACCTTCATTTAGT
TGAAAGGCTGGAGCTTTCCCGTTTGTTGGTGTTATCTGATTCATTATCTGCGGTTCACATGATCAATGGTCTTGAGGAAGCTGAGGTGGACGGTGCAAACACTGTGATGG
ATATCCGGAAGATCTATGGAGCTTTTGCTTCAATTACCTTTCAGCATGTGTCCCGGACTCATAATTTTGCGGCTCACTCGCTTGTCAAGTTAGGTTCTTCTGGCTCTAGT
GCCTTGTGGTTCTGCCAGGCTCCGCCTGGGATATCATCCTTTTATTTGAATGATTTAAACTTTATTTCGGGCTATTTGACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGTAATCTTCAAGCCAAATTGATGTTAGTTGATGTTTGCAGAGTCTCCTCTTTAAGCTCTTTGTGCGCTGAAGCTTATGCCATTTATGAGAACCTTCATTTAGT
TGAAAGGCTGGAGCTTTCCCGTTTGTTGGTGTTATCTGATTCATTATCTGCGGTTCACATGATCAATGGTCTTGAGGAAGCTGAGGTGGACGGTGCAAACACTGTGATGG
ATATCCGGAAGATCTATGGAGCTTTTGCTTCAATTACCTTTCAGCATGTGTCCCGGACTCATAATTTTGCGGCTCACTCGCTTGTCAAGTTAGGTTCTTCTGGCTCTAGT
GCCTTGTGGTTCTGCCAGGCTCCGCCTGGGATATCATCCTTTTATTTGAATGATTTAAACTTTATTTCGGGCTATTTGACTTTGTAA
Protein sequenceShow/hide protein sequence
MVGNLQAKLMLVDVCRVSSLSSLCAEAYAIYENLHLVERLELSRLLVLSDSLSAVHMINGLEEAEVDGANTVMDIRKIYGAFASITFQHVSRTHNFAAHSLVKLGSSGSS
ALWFCQAPPGISSFYLNDLNFISGYLTL