; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010088 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010088
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr06:18215932..18217038
RNA-Seq ExpressionHG10010088
SyntenyHG10010088
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.7e-2034.38Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKL-GFSIGSLGKNIFLIKFDSRRDKEMVLKLGP
        M +  LL++WK  +L+ EE +  + +D +        L+  L+ KLLS R I+  ++KNT   AW+     FS+  +G NIFL  F+   D+  +L++GP
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKL-GFSIGSLGKNIFLIKFDSRRDKEMVLKLGP

Query:  GLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD
          FD +L+I++ P +  K   + F   + WV   D+ L   NK MA RLG+A+G+F + +
Subjt:  GLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.6e-2738.99Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPG
        MD + LL DW+K +L+ EE E  + +D +     +  L Y LVGKLL+ R I+  ++      AW+ +   ++ S+GKN+FL  F    D   V+K GP 
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPG

Query:  LFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD
         FD +L++L+ P ++  IS+L F++ AFW+ L D+P+ + NK MA RLG+A+G F++ D
Subjt:  LFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.8e-2440.13Show/hide
Query:  LLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTK-LGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDN
        LL++WK  +L+ EE+ET I +D +  +    +L+  LVGKL   R I   ++KNT   AW+ +   F + SLG N+FL  F    D+  + K GP  FD 
Subjt:  LLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTK-LGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDN

Query:  SLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLD
        +L+++  P A +  S+L F K   WV   D+PLG   + MA RLG+A+G F EAD D
Subjt:  SLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLD

XP_038688762.1 uncharacterized protein LOC119987929 [Tripterygium wilfordii]1.0e-1935.9Show/hide
Query:  WKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDNSLLIL
        W KL++++EEK+  I +D     F++      + GK++  RFIA  ++     N W+T        LGKNIF I F S  DK  V++  P LFD SLL+L
Subjt:  WKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDNSLLIL

Query:  EVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPKG
        +  ++ V I  L FD   FWV L ++PL   ++ +  ++G  +G  +E D D P+G
Subjt:  EVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPKG

XP_042950155.1 uncharacterized protein LOC122282269 [Carya illinoinensis]2.3e-1936.94Show/hide
Query:  DVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFD
        D L + WK  RLSEEE+E+ I +D    + +  + +  LVGKL S R +   +I NT S  WR    F   S+  N+F+I F+   D E V    P LFD
Subjt:  DVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFD

Query:  NSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADL
        N+L +L+     V  +QL  D  AFW+ L ++PL   NK +  ++G ++G  L+ D+
Subjt:  NSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADL

TrEMBL top hitse value%identityAlignment
A0A2N9EEA9 CCHC-type domain-containing protein5.0e-2035.54Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSF-NQGQL-DYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLG
        MDS+ LLDDW+K  L+E+E     G D   D+  N  +L   CLVGKL+++++     +K T    W T  G +  S+  N+F+ +F + ++++ VL   
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSF-NQGQL-DYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLG

Query:  PGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPK
        P LFDN LLIL V    +  SQ+   ++ FWV L  IPL +  +    R+G   G  ++  +D+PK
Subjt:  PGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPK

A0A2N9HND5 CCHC-type domain-containing protein5.0e-2035.54Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSF-NQGQL-DYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLG
        MDS+ LLDDW+K  L+E+E     G D   D+  N  +L   CLVGKL+++++     +K T    W T  G +  S+  N+F+ +F + ++++ VL   
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSF-NQGQL-DYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLG

Query:  PGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPK
        P LFDN LLIL V    +  SQ+   ++ FWV L  IPL +  +    R+G   G  ++  +D+PK
Subjt:  PGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPK

A0A6J1BSZ1 uncharacterized protein LOC1110054811.3e-2034.38Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKL-GFSIGSLGKNIFLIKFDSRRDKEMVLKLGP
        M +  LL++WK  +L+ EE +  + +D +        L+  L+ KLLS R I+  ++KNT   AW+     FS+  +G NIFL  F+   D+  +L++GP
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKL-GFSIGSLGKNIFLIKFDSRRDKEMVLKLGP

Query:  GLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD
          FD +L+I++ P +  K   + F   + WV   D+ L   NK MA RLG+A+G+F + +
Subjt:  GLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD

A0A6J1DU55 uncharacterized protein LOC1110231353.2e-2738.99Show/hide
Query:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPG
        MD + LL DW+K +L+ EE E  + +D +     +  L Y LVGKLL+ R I+  ++      AW+ +   ++ S+GKN+FL  F    D   V+K GP 
Subjt:  MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPG

Query:  LFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD
         FD +L++L+ P ++  IS+L F++ AFW+ L D+P+ + NK MA RLG+A+G F++ D
Subjt:  LFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEAD

A0A6J1DX30 uncharacterized protein LOC1110248743.3e-2440.13Show/hide
Query:  LLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTK-LGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDN
        LL++WK  +L+ EE+ET I +D +  +    +L+  LVGKL   R I   ++KNT   AW+ +   F + SLG N+FL  F    D+  + K GP  FD 
Subjt:  LLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTK-LGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDN

Query:  SLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLD
        +L+++  P A +  S+L F K   WV   D+PLG   + MA RLG+A+G F EAD D
Subjt:  SLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding8.4e-0427.63Show/hide
Query:  FDSRRDKEMVLKLGPGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADL
        F S      +L+ GP  F++ + +++  +     S   F +  FW+ +  IPL F    +   +G+ MG+FLE +L
Subjt:  FDSRRDKEMVLKLGPGLFDNSLLILEVPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGACGTTCTGTTGGACGACTGGAAGAAGCTTCGTCTGTCGGAAGAAGAAAAGGAAACAAAAATAGGATTAGACCCTAATATTGATTCATTTAACCAGGGTCA
ACTGGATTACTGTTTGGTTGGGAAGCTGCTGTCATCACGTTTCATTGCACCAAGAATTATCAAGAACACTTTCTCTAATGCGTGGAGAACAAAACTTGGTTTTAGCATTG
GAAGTCTGGGGAAGAACATTTTTCTTATTAAATTTGATTCACGCAGGGATAAAGAAATGGTTCTCAAGTTGGGCCCGGGGCTATTTGATAATTCTTTACTAATTTTAGAA
GTTCCAAAGGCCAACGTCAAAATTTCACAACTAACTTTTGACAAAGCAGCATTCTGGGTTTGTCTGTTAGATATTCCTCTTGGATTCCAGAACAAAATCATGGCTAGACG
GTTGGGAGATGCAATGGGTGTTTTCTTAGAAGCCGATCTTGACATTCCTAAAGGAGATCCCTCCAGAATCTTTAAACAAAATTTGTCGGAGGAAAAAACCTTATCACCAA
AGTCCAAAAATGTCGTGAATTCATCCACCTCAGCTGATCCTATAGATCTTAATATAAGACCAATGGAGTATGACTCAGTTTTGAACCCCTTTATTCCACAATTAGAGAAA
GGAAAGGAAGCTTTTCATCAGTCCTTTAGTAAACCTCTCCAGATTCTTGAATCTTCTATCTCTCCTGGTGGGCCTCCTGGGAAAGAATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAGACGTTCTGTTGGACGACTGGAAGAAGCTTCGTCTGTCGGAAGAAGAAAAGGAAACAAAAATAGGATTAGACCCTAATATTGATTCATTTAACCAGGGTCA
ACTGGATTACTGTTTGGTTGGGAAGCTGCTGTCATCACGTTTCATTGCACCAAGAATTATCAAGAACACTTTCTCTAATGCGTGGAGAACAAAACTTGGTTTTAGCATTG
GAAGTCTGGGGAAGAACATTTTTCTTATTAAATTTGATTCACGCAGGGATAAAGAAATGGTTCTCAAGTTGGGCCCGGGGCTATTTGATAATTCTTTACTAATTTTAGAA
GTTCCAAAGGCCAACGTCAAAATTTCACAACTAACTTTTGACAAAGCAGCATTCTGGGTTTGTCTGTTAGATATTCCTCTTGGATTCCAGAACAAAATCATGGCTAGACG
GTTGGGAGATGCAATGGGTGTTTTCTTAGAAGCCGATCTTGACATTCCTAAAGGAGATCCCTCCAGAATCTTTAAACAAAATTTGTCGGAGGAAAAAACCTTATCACCAA
AGTCCAAAAATGTCGTGAATTCATCCACCTCAGCTGATCCTATAGATCTTAATATAAGACCAATGGAGTATGACTCAGTTTTGAACCCCTTTATTCCACAATTAGAGAAA
GGAAAGGAAGCTTTTCATCAGTCCTTTAGTAAACCTCTCCAGATTCTTGAATCTTCTATCTCTCCTGGTGGGCCTCCTGGGAAAGAATGTTGA
Protein sequenceShow/hide protein sequence
MDSDVLLDDWKKLRLSEEEKETKIGLDPNIDSFNQGQLDYCLVGKLLSSRFIAPRIIKNTFSNAWRTKLGFSIGSLGKNIFLIKFDSRRDKEMVLKLGPGLFDNSLLILE
VPKANVKISQLTFDKAAFWVCLLDIPLGFQNKIMARRLGDAMGVFLEADLDIPKGDPSRIFKQNLSEEKTLSPKSKNVVNSSTSADPIDLNIRPMEYDSVLNPFIPQLEK
GKEAFHQSFSKPLQILESSISPGGPPGKEC