; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010100 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010100
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 13
Genome locationChr06:18388238..18389093
RNA-Seq ExpressionHG10010100
SyntenyHG10010100
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593806.1 DEAD-box ATP-dependent RNA helicase 13, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4559.8Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------
        MA +PMQS SSQKRR KRK+ QKDPEL+RLDSL W SSIP +D LS+FIGSNDLEGGFLSLEEIDEA YGL IP+P+T+K KLT  A             
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------

Query:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                T   GKKEKKKKKKKK  KV +E  T+EE VAE+IGGSD+DG+ETE+GDEMD GD LE EKK QKK+K TK+HGI
Subjt:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

XP_004147170.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Cucumis sativus]2.8e-5567.51Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------
        MAAE  QSTSSQKRRLKRKKTQKDPE ERLDSLPWNSSIP +D LS+FIGSNDLEGGFLSLEEIDEA YG+ IPEPDT KHKL PKA+GN+ K       
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------

Query:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                      K++KKKKKKKKVIHEV TAE+ VA DIGG+DNDGIETEIGDEMD+ D LETEKK+QKKEKETK+HGI
Subjt:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

XP_022964342.1 DEAD-box ATP-dependent RNA helicase 13 [Cucurbita moschata]1.6e-4560.3Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------
        MA +PMQS SSQKRR KRK+ QKDPEL+RLDSL W SSIP +D LS+FIGSNDLEGGFLSLEEIDEA YGL IP+P+T+K KLT  A             
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------

Query:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                T   GKKEKKKKKKKK  KV +E  T+EE VAE+IGGSD+DGIETE+GDEMD GD LE EKK QKK+K TK+HGI
Subjt:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

XP_038874422.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Benincasa hispida]3.2e-5971.57Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------
        MA EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPS+D LS+FIGSNDLEGGFLSLEEIDEA YGLAIPEP TMK KL   A+GNS K       
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------

Query:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                      K++KKKKKKKKVIHEV TAEEVV EDIGGSDNDGIETEIGDEMD+ D LETEKKRQKKEKETKNHGI
Subjt:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

XP_038874423.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Benincasa hispida]3.2e-5971.57Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------
        MA EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPS+D LS+FIGSNDLEGGFLSLEEIDEA YGLAIPEP TMK KL   A+GNS K       
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------

Query:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                      K++KKKKKKKKVIHEV TAEEVV EDIGGSDNDGIETEIGDEMD+ D LETEKKRQKKEKETKNHGI
Subjt:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

TrEMBL top hitse value%identityAlignment
A0A0A0LNK8 Uncharacterized protein2.8e-5667.68Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------
        MAAE  QSTSSQKRRLKRKKTQKDPE ERLDSLPWNSSIP +D LS+FIGSNDLEGGFLSLEEIDEA YG+ IPEPDT KHKL PKA+GN+ K       
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGK-------

Query:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGIG
                                      K++KKKKKKKKVIHEV TAE+ VA DIGG+DNDGIETEIGDEMD+ D LETEKK+QKKEKETK+HGIG
Subjt:  ------------------------------KEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGIG

A0A6J1C9R6 DEAD-box ATP-dependent RNA helicase 13 isoform X11.4e-4462.16Show/hide
Query:  EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA----------------
        E M S   QKRR KRK+TQKDPELERLDSL WNSSIPS+DPLS+FIGSN+LEGGFLSLEEIDEA YGLAIPEP+T+K K   KA                
Subjt:  EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA----------------

Query:  ------------------TGNSGKKEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKE
                          TG  GKKE KK+KKKKKVI+E  T EE VAEDIGGSD+DG ETE+GDEMD+GD LET+KK+QKK+K+
Subjt:  ------------------TGNSGKKEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKE

A0A6J1CB51 DEAD-box ATP-dependent RNA helicase 13 isoform X21.4e-4462.16Show/hide
Query:  EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA----------------
        E M S   QKRR KRK+TQKDPELERLDSL WNSSIPS+DPLS+FIGSN+LEGGFLSLEEIDEA YGLAIPEP+T+K K   KA                
Subjt:  EPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA----------------

Query:  ------------------TGNSGKKEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKE
                          TG  GKKE KK+KKKKKVI+E  T EE VAEDIGGSD+DG ETE+GDEMD+GD LET+KK+QKK+K+
Subjt:  ------------------TGNSGKKEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKE

A0A6J1HMW3 DEAD-box ATP-dependent RNA helicase 137.5e-4660.3Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------
        MA +PMQS SSQKRR KRK+ QKDPEL+RLDSL W SSIP +D LS+FIGSNDLEGGFLSLEEIDEA YGL IP+P+T+K KLT  A             
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------

Query:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                T   GKKEKKKKKKKK  KV +E  T+EE VAE+IGGSD+DGIETE+GDEMD GD LE EKK QKK+K TK+HGI
Subjt:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

A0A6J1KIE8 DEAD-box ATP-dependent RNA helicase 138.3e-4559.3Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------
        MA +PMQS SSQKRR KRK+ QKDPEL+RLDSL W SSIP +D LS+FIGSNDLEGGFLSLEEIDEA YGL IP+P+T+K KLT  A             
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKA-------------

Query:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI
                                T   GKKEKKKKKKKK  KV +E  T+EE V E IGGSD DGIETE+GDE+D GD LE EKK QK++KETK+HGI
Subjt:  ------------------------TGNSGKKEKKKKKKKK--KVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGI

SwissProt top hitse value%identityAlignment
Q93Y39 DEAD-box ATP-dependent RNA helicase 134.2e-0934.57Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIP------SEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKK
        M     +S+  +KR  +  K +++ + ER+DSLPW+SSIP       E   + F GS  L+GGFLSLEEIDEA Y L +P   T++ ++T +      K+
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIP------SEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKK

Query:  EKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETK
          +      + + E++  EE        ++ DG   E  D+ D+ D  ET KK++KK K  K
Subjt:  EKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETK

Arabidopsis top hitse value%identityAlignment
AT3G16840.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.0e-1034.57Show/hide
Query:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIP------SEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKK
        M     +S+  +KR  +  K +++ + ER+DSLPW+SSIP       E   + F GS  L+GGFLSLEEIDEA Y L +P   T++ ++T +      K+
Subjt:  MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIP------SEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKK

Query:  EKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETK
          +      + + E++  EE        ++ DG   E  D+ D+ D  ET KK++KK K  K
Subjt:  EKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCAGAACCAATGCAGTCTACCTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTGGAACGTCTCGACTCACTCCCCTGGAACTC
ATCAATCCCTAGCGAGGACCCTTTATCTTCATTCATTGGTTCCAATGATCTCGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAAGCTGTGTATGGCTTGGCGATTC
CCGAACCTGATACAATGAAACACAAGTTGACACCAAAGGCCACTGGAAATTCAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAAGGTCATTCATGAAGTCCTA
ACGGCTGAGGAAGTTGTGGCTGAAGATATAGGTGGCAGTGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACAATGGCGATCCTTTGGAGACGGAGAAGAA
GCGACAAAAGAAAGAAAAAGAAACAAAGAACCATGGAATTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCAGAACCAATGCAGTCTACCTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTGGAACGTCTCGACTCACTCCCCTGGAACTC
ATCAATCCCTAGCGAGGACCCTTTATCTTCATTCATTGGTTCCAATGATCTCGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAAGCTGTGTATGGCTTGGCGATTC
CCGAACCTGATACAATGAAACACAAGTTGACACCAAAGGCCACTGGAAATTCAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAAGGTCATTCATGAAGTCCTA
ACGGCTGAGGAAGTTGTGGCTGAAGATATAGGTGGCAGTGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACAATGGCGATCCTTTGGAGACGGAGAAGAA
GCGACAAAAGAAAGAAAAAGAAACAAAGAACCATGGAATTGGTTAG
Protein sequenceShow/hide protein sequence
MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKKEKKKKKKKKKVIHEVL
TAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGIG