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HG10010316 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010316
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA mismatch repair mutS
Genome locationChr06:21031234..21033382
RNA-Seq ExpressionHG10010316
SyntenyHG10010316
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0051213 - dioxygenase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013616.1 hypothetical protein SDJN02_23783 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-1267.65Show/hide
Query:  FEIGELTNFLSEAARTLQLVPQLQLHDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        F I E+  F +E   TL        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  FEIGELTNFLSEAARTLQLVPQLQLHDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

XP_022959449.1 uncharacterized protein LOC111460420 [Cucurbita moschata]4.9e-1290.7Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

XP_023006006.1 uncharacterized protein LOC111498883 [Cucurbita maxima]4.9e-1290.7Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

XP_023548311.1 uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo]4.9e-1290.7Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

XP_038906919.1 uncharacterized protein LOC120092786 [Benincasa hispida]9.9e-1395.35Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEKLAWENSPEAQAIREALNPWRN DAAAEARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

TrEMBL top hitse value%identityAlignment
A0A0A0K8V0 Uncharacterized protein2.9e-1083.33Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD
        +DKV V+ESE+LAWENSPEAQAIREALNPWRNSDAA EA K+
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD

A0A5A7SQJ1 Uncharacterized protein1.2e-1188.1Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD
        +DKVTV+ESE+LAWENSPEAQAIREALNPWRN DAAAEAR+D
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD

A0A6J1CA87 uncharacterized protein LOC1110097361.2e-1188.1Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD
        +DKVTVLESEKLAWENSPEAQA+REALNPWRN DA AEA+KD
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKD

A0A6J1H837 uncharacterized protein LOC1114604202.4e-1290.7Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

A0A6J1KWK7 uncharacterized protein LOC1114988832.4e-1290.7Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT
        +DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G62450.1 unknown protein8.3e-1080Show/hide
Query:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA
        +DKVTV+E+E+ A ENSPEAQAIREALNPWRN DA
Subjt:  HDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTTGAGATCGGAGAATTAACAAATTTTCTCTCTGAAGCCGCAAGGACGTTGCAGCTAGTTCCGCAGCTTCAGCTTCATGATAAAGTAACAGTTCTGGAGTCGGA
GAAGCTGGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGGCCAGGAAAGACACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTTGAGATCGGAGAATTAACAAATTTTCTCTCTGAAGCCGCAAGGACGTTGCAGCTAGTTCCGCAGCTTCAGCTTCATGATAAAGTAACAGTTCTGGAGTCGGA
GAAGCTGGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGGCCAGGAAAGACACCTAA
Protein sequenceShow/hide protein sequence
MMFEIGELTNFLSEAARTLQLVPQLQLHDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAEARKDT