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HG10010319 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010319
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionclassical arabinogalactan protein 25
Genome locationChr06:21067963..21068283
RNA-Seq ExpressionHG10010319
SyntenyHG10010319
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2567.26Show/hide
Query:  MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLL
        M FMA  SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+FEA  PDSSALSP G PGS A PK  P YSN LLLL
Subjt:  MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLL

Query:  TGLAVFPFSLHFY
        T L++  F LH +
Subjt:  TGLAVFPFSLHFY

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]6.3e-2771.3Show/hide
Query:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL
        M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSPPNPDDFEA  PDSSALSPFG PGS A P   P YSNW LL
Subjt:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL

Query:  LLTGLAVFPFSLHFY
        LL GLA+  FS+H +
Subjt:  LLTGLAVFPFSLHFY

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]6.3e-2771.3Show/hide
Query:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL
        M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSPPNPDDFEA  PDSSALSPFG PGS A P   P YSNW LL
Subjt:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL

Query:  LLTGLAVFPFSLHFY
        LL GLA+  FS+H +
Subjt:  LLTGLAVFPFSLHFY

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]1.5e-2567.59Show/hide
Query:  MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV
        M SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+FEA  PDSSALSP G PGS A PK  P YSN LLLLT L++
Subjt:  MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV

Query:  FPFSLHFY
          F LH +
Subjt:  FPFSLHFY

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]4.1e-2668.14Show/hide
Query:  MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLL
        M FMA  SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+FEA  PDSSALSPFG PGS A PK  P YSN LLLL
Subjt:  MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLL

Query:  TGLAVFPFSLHFY
        T L++  F LH +
Subjt:  TGLAVFPFSLHFY

TrEMBL top hitse value%identityAlignment
A0A0A0KBF8 Uncharacterized protein3.0e-2771.3Show/hide
Query:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL
        M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSPPNPDDFEA  PDSSALSPFG PGS A P   P YSNW LL
Subjt:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL

Query:  LLTGLAVFPFSLHFY
        LL GLA+  FS+H +
Subjt:  LLTGLAVFPFSLHFY

A0A1S3C8K2 classical arabinogalactan protein 253.0e-2771.3Show/hide
Query:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL
        M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSPPNPDDFEA  PDSSALSPFG PGS A P   P YSNW LL
Subjt:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL

Query:  LLTGLAVFPFSLHFY
        LL GLA+  FS+H +
Subjt:  LLTGLAVFPFSLHFY

A0A5A7SSC0 Classical arabinogalactan protein 253.0e-2771.3Show/hide
Query:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL
        M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSPPNPDDFEA  PDSSALSPFG PGS A P   P YSNW LL
Subjt:  MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LL

Query:  LLTGLAVFPFSLHFY
        LL GLA+  FS+H +
Subjt:  LLTGLAVFPFSLHFY

A0A6J1CBZ0 classical arabinogalactan protein 257.5e-2677.78Show/hide
Query:  PISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSL
        PIS FQ+LSPEIAPLLPS GG IPSAT SIPTIPSNPSPPNPD+FEA APD SALSPFG PGS A P   P YSN LLLL G A+F FSL
Subjt:  PISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSL

A0A6J1H4T0 classical arabinogalactan protein 25-like7.5e-2667.59Show/hide
Query:  MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV
        M SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+FEA  PDSSALSP G PGS A PK  P YSN LLLLT L++
Subjt:  MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV

Query:  FPFSLHFY
          F LH +
Subjt:  FPFSLHFY

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 259.4e-1053.57Show/hide
Query:  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV
        ISL QQLSPEIAPLLPS G  +PS  D   TIPS+PSPP+PD  + S PD  A SPF  P  S+ P   PS  +  +LL  L +
Subjt:  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV

Arabidopsis top hitse value%identityAlignment
AT5G18690.1 arabinogalactan protein 256.7e-1153.57Show/hide
Query:  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV
        ISL QQLSPEIAPLLPS G  +PS  D   TIPS+PSPP+PD  + S PD  A SPF  P  S+ P   PS  +  +LL  L +
Subjt:  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTCATGGCCATGCCCTCACCCTTGCTTGCTTTACCCATCTCTCTTTTTCAACAACTTTCCCCTGAAATTGCTCCATTATTGCCTTCTACCGGTGGTAAGATTCC
TTCTGCAACTGATTCAATTCCCACCATTCCTTCCAACCCTAGCCCTCCAAATCCAGACGACTTCGAGGCTTCTGCTCCTGATTCCTCTGCCCTTTCTCCATTTGGCTTCC
CAGGTTCTTCCGCACTTCCTAAATTCTTCCCTTCCTATTCAAATTGGCTTCTTCTTCTCACTGGATTAGCTGTATTTCCCTTCTCTCTGCACTTTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTCATGGCCATGCCCTCACCCTTGCTTGCTTTACCCATCTCTCTTTTTCAACAACTTTCCCCTGAAATTGCTCCATTATTGCCTTCTACCGGTGGTAAGATTCC
TTCTGCAACTGATTCAATTCCCACCATTCCTTCCAACCCTAGCCCTCCAAATCCAGACGACTTCGAGGCTTCTGCTCCTGATTCCTCTGCCCTTTCTCCATTTGGCTTCC
CAGGTTCTTCCGCACTTCCTAAATTCTTCCCTTCCTATTCAAATTGGCTTCTTCTTCTCACTGGATTAGCTGTATTTCCCTTCTCTCTGCACTTTTATTGA
Protein sequenceShow/hide protein sequence
MFFMAMPSPLLALPISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY