; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010420 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010420
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein SINE3
Genome locationChr06:22040180..22041193
RNA-Seq ExpressionHG10010420
SyntenyHG10010420
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575120.1 hypothetical protein SDJN03_25759, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8178.92Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDR-----SFLQGVNPAFSASCGTSLFPDLSLSSV
        MEKRMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFSP+SVVSD+NQIPDIDR     S+L  VNPA SA CG+SL PDLS SSV
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDR-----SFLQGVNPAFSASCGTSLFPDLSLSSV

Query:  VSF-----DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWI
        V+F     DKVPVNFSGSN D+DE  AGSV  EIAVNSL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I QLIS KN VLS+ +FLWI
Subjt:  VSF-----DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWI

Query:  IVLAIAFFFGSGVKSSFIGPLPT
        IVLA+AFFF S VKSSFIGPLPT
Subjt:  IVLAIAFFFGSGVKSSFIGPLPT

XP_008458341.1 PREDICTED: uncharacterized protein LOC103497781 [Cucumis melo]1.7e-8783.94Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKV V+FSGSN DM+EASAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLISVKN+VLS+CVFLWI+VLAI
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGVKSSF GPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

XP_011657295.2 uncharacterized protein LOC105435846 [Cucumis sativus]4.4e-8078.44Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKRMKD+QTPQR+QT NR SRKPQKIAKC +AT  SLS+DKI  ISKE+ SP+S VSD+NQI DI  SFLQGVNP FSA C TSLFPDLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKV  +FSGSN D++EASAGSVE EIAVN +RRALTQVLQSTDVDHQSKKLIDASMRII DDFLAIPQ+RDQIAQLIS K HVL +CVFLWIIVLA 
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGV+SSF GPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

XP_022959315.1 uncharacterized protein LOC111460327 isoform X1 [Cucurbita moschata]1.0e-8179.36Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        ME+RMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFS +SVVSD+NQIPDIDRSFL  VNPA SA CG+SL PDLS SSVV+F  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKVPVNFSGSN D+DE  AGSV  EIAV+SL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I Q+IS KN VLS+ +FLWIIVLA+
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFFF S VKSSFIGPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

XP_038876305.1 uncharacterized protein LOC120068561 [Benincasa hispida]6.1e-9892.2Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEK+MKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSP+SVV+DINQIPDID +FLQGVNPAFSASC TSLF DLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKVPVNFSGSN DMDEASAGSVEV+IAVNSLRRALTQVLQSTDVDHQSKKLIDASM IIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGVKSSFIGPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

TrEMBL top hitse value%identityAlignment
A0A0A0KI59 Uncharacterized protein2.1e-8078.44Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKRMKD+QTPQR+QT NR SRKPQKIAKC +AT  SLS+DKI  ISKE+ SP+S VSD+NQI DI  SFLQGVNP FSA C TSLFPDLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKV  +FSGSN D++EASAGSVE EIAVN +RRALTQVLQSTDVDHQSKKLIDASMRII DDFLAIPQ+RDQIAQLIS K HVL +CVFLWIIVLA 
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGV+SSF GPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

A0A1S4E1Y8 uncharacterized protein LOC1034977818.1e-8883.94Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKV V+FSGSN DM+EASAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLISVKN+VLS+CVFLWI+VLAI
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGVKSSF GPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

A0A5D3BTA3 Uncharacterized protein8.1e-8883.94Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKV V+FSGSN DM+EASAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLISVKN+VLS+CVFLWI+VLAI
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGVKSSF GPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

A0A6J1EQ83 uncharacterized protein LOC1114368228.9e-7977.06Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        MEKR K+YQTP RDQ ANRRS+KP KI K LTATFSS  DDKIQPI KEDFSP+SVVS+I+QIPDID SFLQ VNPA S SC +SLFP+LS SSVV+F  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKVPVNF GSN ++DEASAGSVE EIAVN LRRAL+QVLQSTDVDHQSKKLIDAS+RIIVD+FLAIPQERD I +LIS K+HVLSL +FLWIIVL +
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFF GSGV++ FIGPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

A0A6J1H5Y6 uncharacterized protein LOC111460327 isoform X15.1e-8279.36Show/hide
Query:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--
        ME+RMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFS +SVVSD+NQIPDIDRSFL  VNPA SA CG+SL PDLS SSVV+F  
Subjt:  MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF--

Query:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI
           DKVPVNFSGSN D+DE  AGSV  EIAV+SL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I Q+IS KN VLS+ +FLWIIVLA+
Subjt:  ---DKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAI

Query:  AFFFGSGVKSSFIGPLPT
        AFFF S VKSSFIGPLPT
Subjt:  AFFFGSGVKSSFIGPLPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06600.1 unknown protein9.3e-0427.78Show/hide
Query:  KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVS
        KR+KD +   R  T  +R            ATFS +S +  +     DFSP+S +S    I D +  S +QG      +S      P++ L    S V +
Subjt:  KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVS

Query:  FDKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAF
           V      S+ D  ++    V++  +V SLR  + ++          KKLI +     VD+      E + + ++++VK  ++ L   LW I+ AI  
Subjt:  FDKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAF

Query:  FFGSGVKSSFIGPLPT
        FF SG + ++ GPLPT
Subjt:  FFGSGVKSSFIGPLPT

AT3G06600.2 unknown protein9.3e-0427.78Show/hide
Query:  KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVS
        KR+KD +   R  T  +R            ATFS +S +  +     DFSP+S +S    I D +  S +QG      +S      P++ L    S V +
Subjt:  KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVS

Query:  FDKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAF
           V      S+ D  ++    V++  +V SLR  + ++          KKLI +     VD+      E + + ++++VK  ++ L   LW I+ AI  
Subjt:  FDKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAF

Query:  FFGSGVKSSFIGPLPT
        FF SG + ++ GPLPT
Subjt:  FFGSGVKSSFIGPLPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGGATGAAAGACTACCAAACTCCGCAGAGAGATCAAACCGCAAATCGTAGATCAAGGAAGCCTCAGAAGATCGCCAAATGCTTGACTGCCACATTTTCATC
ACTTTCCGACGATAAAATCCAGCCAATTTCTAAGGAAGATTTCTCTCCGGTTTCTGTTGTCTCAGACATCAATCAAATTCCAGATATCGATAGAAGTTTCTTGCAAGGTG
TTAATCCGGCATTTTCTGCTTCCTGCGGGACCTCGCTTTTCCCCGATCTTTCTCTATCTTCAGTTGTCAGTTTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGAT
GATATGGATGAAGCAAGCGCGGGTTCAGTAGAGGTAGAGATTGCTGTGAATTCTCTACGGCGTGCTCTAACTCAAGTCCTGCAATCGACGGATGTTGATCATCAGTCTAA
GAAGCTTATAGATGCATCTATGCGTATCATTGTGGATGACTTCCTTGCTATACCTCAAGAGCGAGATCAGATTGCTCAACTTATTTCTGTCAAAAATCATGTTCTCTCTC
TCTGTGTATTCCTGTGGATCATCGTCTTGGCTATAGCTTTCTTTTTCGGTTCGGGAGTTAAGAGCTCCTTCATTGGTCCATTGCCAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGGATGAAAGACTACCAAACTCCGCAGAGAGATCAAACCGCAAATCGTAGATCAAGGAAGCCTCAGAAGATCGCCAAATGCTTGACTGCCACATTTTCATC
ACTTTCCGACGATAAAATCCAGCCAATTTCTAAGGAAGATTTCTCTCCGGTTTCTGTTGTCTCAGACATCAATCAAATTCCAGATATCGATAGAAGTTTCTTGCAAGGTG
TTAATCCGGCATTTTCTGCTTCCTGCGGGACCTCGCTTTTCCCCGATCTTTCTCTATCTTCAGTTGTCAGTTTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGAT
GATATGGATGAAGCAAGCGCGGGTTCAGTAGAGGTAGAGATTGCTGTGAATTCTCTACGGCGTGCTCTAACTCAAGTCCTGCAATCGACGGATGTTGATCATCAGTCTAA
GAAGCTTATAGATGCATCTATGCGTATCATTGTGGATGACTTCCTTGCTATACCTCAAGAGCGAGATCAGATTGCTCAACTTATTTCTGTCAAAAATCATGTTCTCTCTC
TCTGTGTATTCCTGTGGATCATCGTCTTGGCTATAGCTTTCTTTTTCGGTTCGGGAGTTAAGAGCTCCTTCATTGGTCCATTGCCAACTTAA
Protein sequenceShow/hide protein sequence
MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSFDKVPVNFSGSND
DMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT