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HG10010438 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010438
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionnuclear export mediator factor Nemf
Genome locationChr06:22219164..22220259
RNA-Seq ExpressionHG10010438
SyntenyHG10010438
Gene Ontology termsGO:0072344 - rescue of stalled ribosome (biological process)
GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process (biological process)
GO:1990112 - RQC complex (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR021846 - NFACT protein, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138531.1 nuclear export mediator factor Nemf [Cucumis sativus]3.0e-6096.88Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

XP_008458314.1 PREDICTED: nuclear export mediator factor Nemf [Cucumis melo]3.0e-6096.88Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

XP_022138405.1 nuclear export mediator factor Nemf [Momordica charantia]4.0e-6096.09Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPY+AVQSYKYHVKIVPG LKKGKAAKTA+NLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

XP_023547964.1 nuclear export mediator factor Nemf [Cucurbita pepo subsp. pepo]1.7e-5892.19Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQG+
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

XP_038907111.1 nuclear export mediator factor Nemf [Benincasa hispida]2.1e-6197.66Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEE+REKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

TrEMBL top hitse value%identityAlignment
A0A1S3C743 nuclear export mediator factor Nemf1.5e-6096.88Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

A0A5D3BTB6 Nuclear export mediator factor Nemf1.5e-6096.88Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

A0A6J1C9D2 nuclear export mediator factor Nemf1.9e-6096.09Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPY+AVQSYKYHVKIVPG LKKGKAAKTA+NLFTHMPEAT REKELIKACTDPELVAAII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQGS
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

A0A6J1H2U9 nuclear export mediator factor Nemf1.4e-5892.19Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQG+
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

A0A6J1KW00 nuclear export mediator factor Nemf1.4e-5892.19Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG LKKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AII
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQGS
        GNARVTA GLTQLKQKQKKGKKSSKQG+
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQGS

SwissProt top hitse value%identityAlignment
O60524 Nuclear export mediator factor NEMF6.9e-2349.57Show/hide
Query:  EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIG
        EE D+ + G EE    N  D LTG P P D+LL+A+P+C PY  + +YKY VK+ PG  KKGKAAKTALN F H  EAT REK+L ++  D +L   I G
Subjt:  EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIG

Query:  NARVTAVGLTQLKQK
          +V+A  L  +K+K
Subjt:  NARVTAVGLTQLKQK

Q8CCP0 Nuclear export mediator factor Nemf2.0e-2248.7Show/hide
Query:  EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIG
        EE D+ + G EE    N  D LTG P P D+L++A+P+C PY  + +YKY VK+ PG  KKGKAAKTALN F H  EAT REK+L ++  D +L   I G
Subjt:  EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIG

Query:  NARVTAVGLTQLKQK
          +V+A  L  +K+K
Subjt:  NARVTAVGLTQLKQK

Q9USN8 Ribosome quality control complex subunit 22.4e-0733Show/hide
Query:  VDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKK
        +D LT NP   D ++ AVP   PYNA+  +   VK++PG+ K GKAA+ ++  F      + +E   ++   D E+VA I  +      G +   +K KK
Subjt:  VDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKK

Q9VBX1 Nuclear export mediator factor NEMF homolog6.9e-1545.65Show/hide
Query:  DVDY---LTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTA
        DVD    LTG P   D LL+A+PV  PY A+Q+YK+ VK+ PG+ K+GKAAK ALN+F      + REK+L+K+  +  L   I G  +++A
Subjt:  DVDY---LTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTA

Arabidopsis top hitse value%identityAlignment
AT5G49930.1 zinc knuckle (CCHC-type) family protein5.7e-5782.54Show/hide
Query:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII
        MEEDDIHE+G+EE+EKL DVDYLTGNPLPTDILLYAVPVCGPYNA+QSYKY VK +PGS+KKGKAAKTA+NLFTHM EA++REKEL+KACTDPEL+AA++
Subjt:  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAII

Query:  GNARVTAVGLTQLKQKQKKGKKSSKQ
        GN ++TA GLTQLKQKQKKGKKS KQ
Subjt:  GNARVTAVGLTQLKQKQKKGKKSSKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGGATGATATTCATGAAATAGGTGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTACGCTGT
GCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCACGTTAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCA
CGCACATGCCTGAAGCAACAATAAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTCGTCGCCGCCATCATTGGGAATGCCCGGGTTACGGCAGTCGGTCTC
ACTCAGTTAAAACAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGGATGATATTCATGAAATAGGTGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTACGCTGT
GCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCACGTTAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCA
CGCACATGCCTGAAGCAACAATAAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTCGTCGCCGCCATCATTGGGAATGCCCGGGTTACGGCAGTCGGTCTC
ACTCAGTTAAAACAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG
Protein sequenceShow/hide protein sequence
MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGL
TQLKQKQKKGKKSSKQGS