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HG10010468 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010468
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:22501651..22501974
RNA-Seq ExpressionHG10010468
SyntenyHG10010468
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-3374.07Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKL NF+PL+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

KAE8646596.1 hypothetical protein Csa_004903, partial [Cucumis sativus]4.1e-3475Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKLTNF+PL+DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]3.8e-3271.03Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLI
        MFLV+L  FEPL+DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL+ FHDA+LDGGSF SMTIH LD  NQ++
Subjt:  MFLVKLTNFEPLMDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLI

Query:  LRFGTSS
        LRF T S
Subjt:  LRFGTSS

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]2.0e-3374.07Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKL NF+PL+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]4.1e-3475Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKLTNF+PL+DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein2.0e-3475Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKLTNF+PL+DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

A0A1S3C8J1 uncharacterized protein LOC1034980101.8e-3271.03Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLI
        MFLV+L  FEPL+DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL+ FHDA+LDGGSF SMTIH LD  NQ++
Subjt:  MFLVKLTNFEPLMDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLI

Query:  LRFGTSS
        LRF T S
Subjt:  LRFGTSS

A0A1S3CL88 uncharacterized protein LOC1035022509.8e-3474.07Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKL NF+PL+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

A0A5D3BV00 Uncharacterized protein1.6e-3169.44Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKLT FEPL+D+TS LAQ S D A +KF P KL++IV NRSPRFFATLQLS ++  N+SV+  HSSKVSLESFHDA+LDGG F SM+IH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
         LRF T S
Subjt:  ILRFGTSS

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein9.8e-3474.07Show/hide
Query:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL
        MFLVKL NF+PL+DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+
Subjt:  MFLVKLTNFEPLMDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQL

Query:  ILRFGTSS
        ILRF T S
Subjt:  ILRFGTSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAAGCTCACAAACTTTGAACCTCTTATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACAT
AATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAAT
CCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAAGCTCACAAACTTTGAACCTCTTATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACAT
AATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAACGCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAAT
CCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
Protein sequenceShow/hide protein sequence
MFLVKLTNFEPLMDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS